RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 RAPGEF3O95398 923 aa20.83■□□□□ 0.92
SHANK1-201ENST00000293441 KRI1Q8N9T8 703 aaKnown RBP20.83■□□□□ 0.92
SHANK1-201ENST00000293441 SART3Q15020 963 aaKnown RBP20.82■□□□□ 0.92
SHANK1-201ENST00000293441 HOMER1Q86YM7 354 aa20.82■□□□□ 0.92
SHANK1-201ENST00000293441 FBXO3Q9UK99 471 aa20.82■□□□□ 0.92
SHANK1-201ENST00000293441 MYL6BP14649 208 aa20.82■□□□□ 0.92
SHANK1-201ENST00000293441 GSE1Q14687 1217 aa20.81■□□□□ 0.92
SHANK1-201ENST00000293441 ANKLE2Q86XL3 938 aa20.81■□□□□ 0.92
SHANK1-201ENST00000293441 NUCB2P80303 420 aa20.81■□□□□ 0.92
SHANK1-201ENST00000293441 NAP1L1P55209 391 aaKnown RBP20.81■□□□□ 0.92
SHANK1-201ENST00000293441 HDGFL1Q5TGJ6 251 aa20.81■□□□□ 0.92
SHANK1-201ENST00000293441 CDCA7LQ96GN5 454 aa20.81■□□□□ 0.92
SHANK1-201ENST00000293441 IFT140Q96RY7 1462 aa20.8■□□□□ 0.92
SHANK1-201ENST00000293441 SNAPC4Q5SXM2 1469 aa20.8■□□□□ 0.92
SHANK1-201ENST00000293441 SPG7Q9UQ90 795 aa20.8■□□□□ 0.92
SHANK1-201ENST00000293441 XPCQ01831 940 aaPredicted RBP20.8■□□□□ 0.92
SHANK1-201ENST00000293441 ZNF530Q6P9A1 599 aaPredicted RBP20.8■□□□□ 0.92
SHANK1-201ENST00000293441 TSR2Q969E8 191 aaKnown RBP20.8■□□□□ 0.92
SHANK1-201ENST00000293441 ZNF692Q9BU19 519 aaPredicted RBP20.8■□□□□ 0.92
SHANK1-201ENST00000293441 NOB1Q9ULX3 412 aaKnown RBP20.8■□□□□ 0.92
SHANK1-201ENST00000293441 SLC4A2P04920 1241 aa20.8■□□□□ 0.92
SHANK1-201ENST00000293441 RTEL1-TNFRSF6BF6WH68 1400 aa20.8■□□□□ 0.92
SHANK1-201ENST00000293441 STK11IPQ8N1F8 1099 aa20.79■□□□□ 0.92
SHANK1-201ENST00000293441 EPS15P42566 896 aa20.79■□□□□ 0.92
SHANK1-201ENST00000293441 GNAI2P04899 355 aa20.79■□□□□ 0.92
SHANK1-201ENST00000293441 CCDC158Q5M9N0 1113 aa20.79■□□□□ 0.92
SHANK1-201ENST00000293441 R3HCC1Q9Y3T6 440 aaKnown RBP20.79■□□□□ 0.92
SHANK1-201ENST00000293441 SLC3A2P08195 630 aaKnown RBP20.79■□□□□ 0.92
SHANK1-201ENST00000293441 SIL1Q9H173 461 aa20.79■□□□□ 0.92
SHANK1-201ENST00000293441 PLEKHH2Q8IVE3 1493 aa20.78■□□□□ 0.92
SHANK1-201ENST00000293441 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.78■□□□□ 0.92
SHANK1-201ENST00000293441 EHBP1L1Q8N3D4 1523 aa20.78■□□□□ 0.92
SHANK1-201ENST00000293441 CCAR1Q8IX12 1150 aaKnown RBP20.78■□□□□ 0.92
SHANK1-201ENST00000293441 ATP2B2Q01814 1243 aa20.78■□□□□ 0.92
SHANK1-201ENST00000293441 CT47A1Q5JQC4 288 aaPredicted RBP20.77■□□□□ 0.92
SHANK1-201ENST00000293441 ERBINQ96RT1 1412 aa20.77■□□□□ 0.92
SHANK1-201ENST00000293441 AAMPQ13685 434 aa20.77■□□□□ 0.92
SHANK1-201ENST00000293441 GNL3LQ9NVN8 582 aaKnown RBP20.77■□□□□ 0.92
SHANK1-201ENST00000293441 ATP2B1P20020 1258 aa20.77■□□□□ 0.91
SHANK1-201ENST00000293441 ERC1Q8IUD2 1116 aa20.77■□□□□ 0.91
SHANK1-201ENST00000293441 CC2D2AQ9P2K1 1620 aa20.76■□□□□ 0.91
SHANK1-201ENST00000293441 HECW1Q76N89 1606 aa20.76■□□□□ 0.91
SHANK1-201ENST00000293441 OLFM4Q6UX06 510 aa20.76■□□□□ 0.91
SHANK1-201ENST00000293441 HFM1A2PYH4 1435 aa20.76■□□□□ 0.91
SHANK1-201ENST00000293441 TMEM132AQ24JP5 1023 aa20.75■□□□□ 0.91
SHANK1-201ENST00000293441 RRS1Q15050 365 aaKnown RBP20.75■□□□□ 0.91
SHANK1-201ENST00000293441 PRDM11Q9NQV5 511 aa20.75■□□□□ 0.91
SHANK1-201ENST00000293441 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
SHANK1-201ENST00000293441 ERICH3Q5RHP9 1530 aa20.75■□□□□ 0.91
SHANK1-201ENST00000293441 ODF2Q5BJF6 829 aa20.74■□□□□ 0.91
SHANK1-201ENST00000293441 SLC52A1Q9NWF4 448 aa20.74■□□□□ 0.91
SHANK1-201ENST00000293441 HIP1O00291 1037 aa20.74■□□□□ 0.91
SHANK1-201ENST00000293441 GPS2Q13227 327 aa20.74■□□□□ 0.91
SHANK1-201ENST00000293441 KIAA1107Q9UPP5 1409 aa20.74■□□□□ 0.91
SHANK1-201ENST00000293441 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
SHANK1-201ENST00000293441 MAP4K4O95819 1239 aaPredicted RBP20.73■□□□□ 0.91
SHANK1-201ENST00000293441 PNISRQ8TF01 805 aaKnown RBP20.73■□□□□ 0.91
SHANK1-201ENST00000293441 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.72■□□□□ 0.91
SHANK1-201ENST00000293441 POGZQ7Z3K3 1410 aa20.72■□□□□ 0.91
SHANK1-201ENST00000293441 RBM5P52756 815 aaKnown RBP eCLIP20.72■□□□□ 0.91
SHANK1-201ENST00000293441 SDF4Q9BRK5 362 aa20.72■□□□□ 0.91
SHANK1-201ENST00000293441 EFCAB5A4FU69 1503 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 PDILTQ8N807 584 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 CDK5RAP3Q96JB5 506 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 BTBD11A6QL63 1104 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 MPHOSPH8Q99549 860 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 ZFYVE27Q5T4F4 411 aa20.71■□□□□ 0.91
SHANK1-201ENST00000293441 PDZRN3Q9UPQ7 1066 aa20.7■□□□□ 0.9
SHANK1-201ENST00000293441 OFD1O75665 1012 aa20.69■□□□□ 0.9
SHANK1-201ENST00000293441 CCDC57Q2TAC2 916 aa20.69■□□□□ 0.9
SHANK1-201ENST00000293441 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.69■□□□□ 0.9
SHANK1-201ENST00000293441 CCT4P50991 539 aaKnown RBP20.69■□□□□ 0.9
SHANK1-201ENST00000293441 ZC3H6P61129 1189 aaKnown RBP20.69■□□□□ 0.9
SHANK1-201ENST00000293441 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
SHANK1-201ENST00000293441 PATL2C9JE40 543 aaKnown RBP20.69■□□□□ 0.9
SHANK1-201ENST00000293441 NEK4P51957 841 aa20.69■□□□□ 0.9
SHANK1-201ENST00000293441 NAT10Q9H0A0 1025 aaKnown RBP20.68■□□□□ 0.9
SHANK1-201ENST00000293441 BICDL1Q6ZP65 573 aa20.68■□□□□ 0.9
SHANK1-201ENST00000293441 TROQ12816 1431 aaPredicted RBP20.68■□□□□ 0.9
SHANK1-201ENST00000293441 BCAR3O75815 825 aa20.68■□□□□ 0.9
SHANK1-201ENST00000293441 SUPT6HQ7KZ85 1726 aaKnown RBP20.68■□□□□ 0.9
SHANK1-201ENST00000293441 SRCIN1Q9C0H9 1055 aa20.67■□□□□ 0.9
SHANK1-201ENST00000293441 IFT57Q9NWB7 429 aa20.67■□□□□ 0.9
SHANK1-201ENST00000293441 GCC1Q96CN9 775 aa20.67■□□□□ 0.9
SHANK1-201ENST00000293441 LRRCC1Q9C099 1032 aa20.67■□□□□ 0.9
SHANK1-201ENST00000293441 BCL11BQ9C0K0 894 aaPredicted RBP20.67■□□□□ 0.9
SHANK1-201ENST00000293441 CEBPZQ03701 1054 aaKnown RBP20.66■□□□□ 0.9
SHANK1-201ENST00000293441 STK3Q13188 491 aa20.66■□□□□ 0.9
SHANK1-201ENST00000293441 FKBP4Q02790 459 aaKnown RBP eCLIP20.65■□□□□ 0.9
SHANK1-201ENST00000293441 KRT18P05783 430 aaKnown RBP20.65■□□□□ 0.9
SHANK1-201ENST00000293441 WWC2Q6AWC2 1192 aa20.64■□□□□ 0.9
SHANK1-201ENST00000293441 NBPF8Q3BBV2 869 aa20.64■□□□□ 0.89
SHANK1-201ENST00000293441 SPINK5Q9NQ38 1064 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-201ENST00000293441 NACAP1Q9BZK3 213 aa20.64■□□□□ 0.89
SHANK1-201ENST00000293441 TXLNAP40222 546 aa20.63■□□□□ 0.89
SHANK1-201ENST00000293441 TTLL5Q6EMB2 1281 aa20.63■□□□□ 0.89
SHANK1-201ENST00000293441 SETQ01105 290 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-201ENST00000293441 DAPK1P53355 1430 aa20.63■□□□□ 0.89
SHANK1-201ENST00000293441 HSP90AB2PQ58FF8 381 aa20.63■□□□□ 0.89
SHANK1-201ENST00000293441 POLA1P09884 1462 aaPredicted RBP20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms