RNA–Protein interactions for RNA: ENST00000263071.8

SCARF1-201, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCARF1, Length 3,443 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-201ENST00000263071 TRIM27P14373 513 aa17.52■□□□□ 0.39
SCARF1-201ENST00000263071 SHANK2Q9UPX8 1470 aa17.51■□□□□ 0.39
SCARF1-201ENST00000263071 SCAF11Q99590 1463 aaKnown RBP17.51■□□□□ 0.39
SCARF1-201ENST00000263071 ASXL1Q8IXJ9 1541 aa17.51■□□□□ 0.39
SCARF1-201ENST00000263071 NUTM2FA1L443 756 aa17.5■□□□□ 0.39
SCARF1-201ENST00000263071 DDX11L8A8MPP1 907 aa17.5■□□□□ 0.39
SCARF1-201ENST00000263071 HAP1P54257 671 aaPredicted RBP17.5■□□□□ 0.39
SCARF1-201ENST00000263071 TRMT2AQ8IZ69 625 aaKnown RBP17.5■□□□□ 0.39
SCARF1-201ENST00000263071 TBC1D32Q96NH3 1257 aa17.5■□□□□ 0.39
SCARF1-201ENST00000263071 CERS3Q8IU89 383 aa17.5■□□□□ 0.39
SCARF1-201ENST00000263071 IGSF3O75054 1194 aa17.5■□□□□ 0.39
SCARF1-201ENST00000263071 RBM42Q9BTD8 480 aaKnown RBP17.49■□□□□ 0.39
SCARF1-201ENST00000263071 TRPM1Q7Z4N2 1603 aa17.49■□□□□ 0.39
SCARF1-201ENST00000263071 NASPP49321 788 aaPredicted RBP17.49■□□□□ 0.39
SCARF1-201ENST00000263071 UGGT1Q9NYU2 1555 aa17.48■□□□□ 0.39
SCARF1-201ENST00000263071 ANTXR1Q9H6X2 564 aa17.48■□□□□ 0.39
SCARF1-201ENST00000263071 CSPP1Q1MSJ5 1256 aa17.48■□□□□ 0.39
SCARF1-201ENST00000263071 FOXD4L6Q3SYB3 417 aaPredicted RBP17.48■□□□□ 0.39
SCARF1-201ENST00000263071 FOXD4L3Q6VB84 417 aaPredicted RBP17.48■□□□□ 0.39
SCARF1-201ENST00000263071 TTC37Q6PGP7 1564 aa17.48■□□□□ 0.39
SCARF1-201ENST00000263071 ADCY10Q96PN6 1610 aa17.47■□□□□ 0.39
SCARF1-201ENST00000263071 NOL8Q76FK4 1167 aaKnown RBP17.47■□□□□ 0.39
SCARF1-201ENST00000263071 CHMP5Q9NZZ3 219 aa17.47■□□□□ 0.39
SCARF1-201ENST00000263071 KCNJ4P48050 445 aa17.46■□□□□ 0.39
SCARF1-201ENST00000263071 SASS6Q6UVJ0 657 aa17.45■□□□□ 0.38
SCARF1-201ENST00000263071 RGS22Q8NE09 1264 aa17.45■□□□□ 0.38
SCARF1-201ENST00000263071 CDC42BPBQ9Y5S2 1711 aa17.45■□□□□ 0.38
SCARF1-201ENST00000263071 CFAP65Q6ZU64 1925 aaKnown RBP17.45■□□□□ 0.38
SCARF1-201ENST00000263071 APPP05067 770 aa17.44■□□□□ 0.38
SCARF1-201ENST00000263071 MLECQ14165 292 aa17.44■□□□□ 0.38
SCARF1-201ENST00000263071 NOS1P29475 1434 aa17.44■□□□□ 0.38
SCARF1-201ENST00000263071 GAS2L3Q86XJ1 694 aa17.44■□□□□ 0.38
SCARF1-201ENST00000263071 ATF7IPQ6VMQ6 1270 aa17.43■□□□□ 0.38
SCARF1-201ENST00000263071 PRDM15P57071 1507 aaPredicted RBP17.43■□□□□ 0.38
SCARF1-201ENST00000263071 TMPOP42166 694 aaKnown RBP17.43■□□□□ 0.38
SCARF1-201ENST00000263071 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.43■□□□□ 0.38
SCARF1-201ENST00000263071 DNAJC2Q99543 621 aaKnown RBP17.42■□□□□ 0.38
SCARF1-201ENST00000263071 RAPGEF3O95398 923 aa17.42■□□□□ 0.38
SCARF1-201ENST00000263071 DCTN1Q14203 1278 aa17.42■□□□□ 0.38
SCARF1-201ENST00000263071 PIK3C2GO75747 1445 aa17.42■□□□□ 0.38
SCARF1-201ENST00000263071 NPM1P06748 294 aaKnown RBP eCLIP17.41■□□□□ 0.38
SCARF1-201ENST00000263071 DDX19BQ9UMR2 479 aa17.41■□□□□ 0.38
SCARF1-201ENST00000263071 PRKAR2BP31323 418 aa17.41■□□□□ 0.38
SCARF1-201ENST00000263071 SPDYE4A6NLX3 237 aa17.41■□□□□ 0.38
SCARF1-201ENST00000263071 CHRM1P11229 460 aaPredicted RBP17.41■□□□□ 0.38
SCARF1-201ENST00000263071 WDR63Q8IWG1 891 aa17.4■□□□□ 0.38
SCARF1-201ENST00000263071 MPNDQ8N594 471 aa17.4■□□□□ 0.38
SCARF1-201ENST00000263071 EVC2Q86UK5 1308 aa17.4■□□□□ 0.38
SCARF1-201ENST00000263071 INSRP06213 1382 aa17.4■□□□□ 0.38
SCARF1-201ENST00000263071 IRX5P78411 483 aaPredicted RBP17.39■□□□□ 0.37
SCARF1-201ENST00000263071 PRAM1Q96QH2 718 aa17.39■□□□□ 0.37
SCARF1-201ENST00000263071 PPP1R9BQ96SB3 815 aa17.38■□□□□ 0.37
SCARF1-201ENST00000263071 ATAD2Q6PL18 1390 aa17.38■□□□□ 0.37
SCARF1-201ENST00000263071 DIAPH1O60610 1272 aaKnown RBP17.38■□□□□ 0.37
SCARF1-201ENST00000263071 CABP1Q9NZU7 370 aa17.38■□□□□ 0.37
SCARF1-201ENST00000263071 E9PCH4 1651 aa17.37■□□□□ 0.37
SCARF1-201ENST00000263071 TSPYL6Q8N831 410 aa17.37■□□□□ 0.37
SCARF1-201ENST00000263071 IPO8O15397 1037 aaKnown RBP17.36■□□□□ 0.37
SCARF1-201ENST00000263071 CHAMP1Q96JM3 812 aa17.36■□□□□ 0.37
SCARF1-201ENST00000263071 FAM83GA6ND36 823 aa17.36■□□□□ 0.37
SCARF1-201ENST00000263071 TNPO1Q92973 898 aaKnown RBP17.36■□□□□ 0.37
SCARF1-201ENST00000263071 ZNF500O60304 480 aaPredicted RBP17.35■□□□□ 0.37
SCARF1-201ENST00000263071 CD2BP2O95400 341 aaKnown RBP17.35■□□□□ 0.37
SCARF1-201ENST00000263071 ATP10AO60312 1499 aa17.35■□□□□ 0.37
SCARF1-201ENST00000263071 ERVK-7P63135 1459 aa17.35■□□□□ 0.37
SCARF1-201ENST00000263071 SKOR2Q2VWA4 1001 aaPredicted RBP17.35■□□□□ 0.37
SCARF1-201ENST00000263071 SAMD1Q6SPF0 538 aaPredicted RBP17.35■□□□□ 0.37
SCARF1-201ENST00000263071 DDX49Q9Y6V7 483 aaKnown RBP17.35■□□□□ 0.37
SCARF1-201ENST00000263071 ARHGEF5Q12774 1597 aa17.35■□□□□ 0.37
SCARF1-201ENST00000263071 CHD1LQ86WJ1 897 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 GBP4Q96PP9 640 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 DUOX2Q9NRD8 1548 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 SSFA2P28290 1259 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 SLC4A10Q6U841 1118 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 NECTIN2Q92692 538 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 NOL7Q9UMY1 257 aaKnown RBP17.34■□□□□ 0.37
SCARF1-201ENST00000263071 HDAC5Q9UQL6 1122 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 VGFO15240 615 aaPredicted RBP17.34■□□□□ 0.37
SCARF1-201ENST00000263071 ATP2B3Q16720 1220 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 TSC1Q92574 1164 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 ZRANB1Q9UGI0 708 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 PREX2Q70Z35 1606 aa17.34■□□□□ 0.37
SCARF1-201ENST00000263071 PLCH2O75038 1416 aa17.33■□□□□ 0.37
SCARF1-201ENST00000263071 WAPLQ7Z5K2 1190 aa17.33■□□□□ 0.37
SCARF1-201ENST00000263071 C16orf71Q8IYS4 520 aaPredicted RBP17.33■□□□□ 0.37
SCARF1-201ENST00000263071 CNPY4Q8N129 248 aa17.33■□□□□ 0.36
SCARF1-201ENST00000263071 TRIM35Q9UPQ4 493 aa17.33■□□□□ 0.36
SCARF1-201ENST00000263071 RRS1Q15050 365 aaKnown RBP17.33■□□□□ 0.36
SCARF1-201ENST00000263071 BCCIPQ9P287 314 aaKnown RBP eCLIP17.33■□□□□ 0.36
SCARF1-201ENST00000263071 POLR3AO14802 1390 aaPredicted RBP17.32■□□□□ 0.36
SCARF1-201ENST00000263071 CCDC66A2RUB6 948 aa17.32■□□□□ 0.36
SCARF1-201ENST00000263071 SMARCA5O60264 1052 aaPredicted RBP17.32■□□□□ 0.36
SCARF1-201ENST00000263071 KRT24Q2M2I5 525 aa17.32■□□□□ 0.36
SCARF1-201ENST00000263071 PHACTR3Q96KR7 559 aa17.32■□□□□ 0.36
SCARF1-201ENST00000263071 MCTP1Q6DN14 999 aa17.32■□□□□ 0.36
SCARF1-201ENST00000263071 EMILIN1Q9Y6C2 1016 aa17.31■□□□□ 0.36
SCARF1-201ENST00000263071 HDGFL2Q7Z4V5 671 aaPredicted RBP17.31■□□□□ 0.36
SCARF1-201ENST00000263071 PTMAP06454 111 aaKnown RBP17.3■□□□□ 0.36
SCARF1-201ENST00000263071 HS1BP3Q53T59 392 aa17.3■□□□□ 0.36
SCARF1-201ENST00000263071 ZBTB9Q96C00 473 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms