RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 PRAM1Q96QH2 718 aa19.47■□□□□ 0.71
DDX56-201ENST00000258772 PREX1Q8TCU6 1659 aa19.47■□□□□ 0.71
DDX56-201ENST00000258772 ANKRD26Q9UPS8 1709 aa19.46■□□□□ 0.71
DDX56-201ENST00000258772 EXOSC9Q06265 439 aaKnown RBP19.46■□□□□ 0.71
DDX56-201ENST00000258772 POGKQ9P215 609 aa19.46■□□□□ 0.71
DDX56-201ENST00000258772 YTHDC2Q9H6S0 1430 aaKnown RBP19.46■□□□□ 0.71
DDX56-201ENST00000258772 MED14O60244 1454 aa19.46■□□□□ 0.71
DDX56-201ENST00000258772 CD163L1Q9NR16 1453 aa19.46■□□□□ 0.71
DDX56-201ENST00000258772 FTSJ3Q8IY81 847 aaKnown RBP19.46■□□□□ 0.71
DDX56-201ENST00000258772 NLRP1Q9C000 1473 aa19.45■□□□□ 0.7
DDX56-201ENST00000258772 CLTCQ00610 1675 aaKnown RBP19.44■□□□□ 0.7
DDX56-201ENST00000258772 SMC4Q9NTJ3 1288 aa19.44■□□□□ 0.7
DDX56-201ENST00000258772 FRAT2O75474 233 aaPredicted RBP19.43■□□□□ 0.7
DDX56-201ENST00000258772 IL16Q14005 1332 aa19.43■□□□□ 0.7
DDX56-201ENST00000258772 SSH1Q8WYL5 1049 aa19.42■□□□□ 0.7
DDX56-201ENST00000258772 BECN1Q14457 450 aa19.42■□□□□ 0.7
DDX56-201ENST00000258772 DIAPH1O60610 1272 aaKnown RBP19.41■□□□□ 0.7
DDX56-201ENST00000258772 TRIM27P14373 513 aa19.41■□□□□ 0.7
DDX56-201ENST00000258772 RIPK4P57078 832 aa19.41■□□□□ 0.7
DDX56-201ENST00000258772 HDGFL2Q7Z4V5 671 aaPredicted RBP19.41■□□□□ 0.7
DDX56-201ENST00000258772 CDK19Q9BWU1 502 aa19.41■□□□□ 0.7
DDX56-201ENST00000258772 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
DDX56-201ENST00000258772 FBXO31Q5XUX0 539 aaPredicted RBP19.41■□□□□ 0.7
DDX56-201ENST00000258772 ALKQ9UM73 1620 aa19.4■□□□□ 0.7
DDX56-201ENST00000258772 PNNQ9H307 717 aaKnown RBP19.4■□□□□ 0.7
DDX56-201ENST00000258772 UPF2Q9HAU5 1272 aaKnown RBP19.4■□□□□ 0.7
DDX56-201ENST00000258772 ATF7IPQ6VMQ6 1270 aa19.39■□□□□ 0.69
DDX56-201ENST00000258772 CABP1Q9NZU7 370 aa19.39■□□□□ 0.69
DDX56-201ENST00000258772 TBC1D32Q96NH3 1257 aa19.39■□□□□ 0.69
DDX56-201ENST00000258772 DDX19BQ9UMR2 479 aa19.39■□□□□ 0.69
DDX56-201ENST00000258772 ARHGEF40Q8TER5 1519 aa19.38■□□□□ 0.69
DDX56-201ENST00000258772 IL27Q8NEV9 243 aa19.38■□□□□ 0.69
DDX56-201ENST00000258772 HDAC1Q13547 482 aaPredicted RBP19.37■□□□□ 0.69
DDX56-201ENST00000258772 NOB1Q9ULX3 412 aaKnown RBP19.37■□□□□ 0.69
DDX56-201ENST00000258772 ITPRIPQ8IWB1 547 aa19.36■□□□□ 0.69
DDX56-201ENST00000258772 KIF20BQ96Q89 1820 aa19.36■□□□□ 0.69
DDX56-201ENST00000258772 FCHSD2O94868 740 aa19.35■□□□□ 0.69
DDX56-201ENST00000258772 STAG3Q9UJ98 1225 aa19.35■□□□□ 0.69
DDX56-201ENST00000258772 TMEM57Q8N5G2 664 aa19.33■□□□□ 0.69
DDX56-201ENST00000258772 IPO8O15397 1037 aaKnown RBP19.33■□□□□ 0.68
DDX56-201ENST00000258772 ZBTB40Q9NUA8 1239 aa19.32■□□□□ 0.68
DDX56-201ENST00000258772 KIF16BQ96L93 1317 aa19.32■□□□□ 0.68
DDX56-201ENST00000258772 CDC42BPGQ6DT37 1551 aa19.32■□□□□ 0.68
DDX56-201ENST00000258772 ALDH1L2Q3SY69 923 aa19.31■□□□□ 0.68
DDX56-201ENST00000258772 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.31■□□□□ 0.68
DDX56-201ENST00000258772 SMC5Q8IY18 1101 aa19.31■□□□□ 0.68
DDX56-201ENST00000258772 SLKQ9H2G2 1235 aaPredicted RBP19.31■□□□□ 0.68
DDX56-201ENST00000258772 POLKQ9UBT6 870 aa19.31■□□□□ 0.68
DDX56-201ENST00000258772 RSPH6AQ9H0K4 717 aa19.31■□□□□ 0.68
DDX56-201ENST00000258772 FBLN1P23142 703 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 TBC1D2Q9BYX2 928 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 ANTXR1Q9H6X2 564 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 MAP2P11137 1827 aaKnown RBP19.3■□□□□ 0.68
DDX56-201ENST00000258772 PRKAR2BP31323 418 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 WAPLQ7Z5K2 1190 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 LRRC7Q96NW7 1537 aa19.3■□□□□ 0.68
DDX56-201ENST00000258772 DLC1Q96QB1 1528 aa19.29■□□□□ 0.68
DDX56-201ENST00000258772 FAM135BQ49AJ0 1406 aa19.28■□□□□ 0.68
DDX56-201ENST00000258772 ATP7BP35670 1465 aa19.28■□□□□ 0.68
DDX56-201ENST00000258772 BRPF1P55201 1214 aaPredicted RBP19.26■□□□□ 0.67
DDX56-201ENST00000258772 ZNF428Q96B54 188 aa19.26■□□□□ 0.67
DDX56-201ENST00000258772 BRPF3Q9ULD4 1205 aa19.26■□□□□ 0.67
DDX56-201ENST00000258772 PPP6R1Q9UPN7 881 aa19.26■□□□□ 0.67
DDX56-201ENST00000258772 A2ML1A8K2U0 1454 aa19.26■□□□□ 0.67
DDX56-201ENST00000258772 C22orf23Q9BZE7 217 aa19.26■□□□□ 0.67
DDX56-201ENST00000258772 PHACTR3Q96KR7 559 aa19.25■□□□□ 0.67
DDX56-201ENST00000258772 PPIP5K1Q6PFW1 1433 aa19.25■□□□□ 0.67
DDX56-201ENST00000258772 NFE2L2Q16236 605 aa19.25■□□□□ 0.67
DDX56-201ENST00000258772 RIMS2Q9UQ26 1411 aa19.24■□□□□ 0.67
DDX56-201ENST00000258772 HMOX1P09601 288 aa19.24■□□□□ 0.67
DDX56-201ENST00000258772 MFAP1P55081 439 aaKnown RBP19.24■□□□□ 0.67
DDX56-201ENST00000258772 SETD1AO15047 1707 aaKnown RBP19.24■□□□□ 0.67
DDX56-201ENST00000258772 NUCB1Q02818 461 aa19.23■□□□□ 0.67
DDX56-201ENST00000258772 RTN4Q9NQC3 1192 aaKnown RBP19.23■□□□□ 0.67
DDX56-201ENST00000258772 VAMP4O75379 141 aa19.22■□□□□ 0.67
DDX56-201ENST00000258772 CYB5RLQ6IPT4 315 aa19.22■□□□□ 0.67
DDX56-201ENST00000258772 EMILIN1Q9Y6C2 1016 aa19.22■□□□□ 0.67
DDX56-201ENST00000258772 CALD1Q05682 793 aaKnown RBP19.22■□□□□ 0.67
DDX56-201ENST00000258772 FAM69CQ0P6D2 419 aa19.22■□□□□ 0.67
DDX56-201ENST00000258772 CPSF1Q10570 1443 aaKnown RBP19.21■□□□□ 0.67
DDX56-201ENST00000258772 RIMBP3CA6NJZ7 1639 aa19.21■□□□□ 0.67
DDX56-201ENST00000258772 RIMBP3BA6NNM3 1639 aa19.21■□□□□ 0.67
DDX56-201ENST00000258772 RIMBP3Q9UFD9 1639 aa19.21■□□□□ 0.67
DDX56-201ENST00000258772 AGLP35573 1532 aa19.21■□□□□ 0.67
DDX56-201ENST00000258772 IL13P35225 146 aa19.21■□□□□ 0.67
DDX56-201ENST00000258772 WASLO00401 505 aaPredicted RBP19.2■□□□□ 0.66
DDX56-201ENST00000258772 SPATA31D1Q6ZQQ2 1576 aa19.2■□□□□ 0.66
DDX56-201ENST00000258772 THUMPD2Q9BTF0 503 aaKnown RBP19.2■□□□□ 0.66
DDX56-201ENST00000258772 REREQ9P2R6 1566 aa19.2■□□□□ 0.66
DDX56-201ENST00000258772 EDC4Q6P2E9 1401 aaKnown RBP19.2■□□□□ 0.66
DDX56-201ENST00000258772 MRPL50Q8N5N7 158 aaKnown RBP19.2■□□□□ 0.66
DDX56-201ENST00000258772 ARHGAP45Q92619 1136 aa19.2■□□□□ 0.66
DDX56-201ENST00000258772 ZBTB7BO15156 539 aaPredicted RBP19.19■□□□□ 0.66
DDX56-201ENST00000258772 GNAI1P63096 354 aa19.19■□□□□ 0.66
DDX56-201ENST00000258772 NME9Q86XW9 330 aa19.19■□□□□ 0.66
DDX56-201ENST00000258772 LNPKQ9C0E8 428 aa19.19■□□□□ 0.66
DDX56-201ENST00000258772 IFT57Q9NWB7 429 aa19.19■□□□□ 0.66
DDX56-201ENST00000258772 ZNF853P0CG23 659 aa19.18■□□□□ 0.66
DDX56-201ENST00000258772 CHD1LQ86WJ1 897 aa19.18■□□□□ 0.66
DDX56-201ENST00000258772 TSPYL6Q8N831 410 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms