RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ZNF710Q8N1W2 664 aa18■□□□□ 0.47
PTPRA-201ENST00000216877 BCL2L12Q9HB09 334 aa18■□□□□ 0.47
PTPRA-201ENST00000216877 PZPP20742 1482 aa17.99■□□□□ 0.47
PTPRA-201ENST00000216877 ABCC1P33527 1531 aa17.99■□□□□ 0.47
PTPRA-201ENST00000216877 NOLC1Q14978 699 aaKnown RBP eCLIP17.99■□□□□ 0.47
PTPRA-201ENST00000216877 MROH1Q8NDA8 1641 aa17.99■□□□□ 0.47
PTPRA-201ENST00000216877 TAF3Q5VWG9 929 aa17.98■□□□□ 0.47
PTPRA-201ENST00000216877 NOL8Q76FK4 1167 aaKnown RBP17.98■□□□□ 0.47
PTPRA-201ENST00000216877 NKTRP30414 1462 aaKnown RBP17.98■□□□□ 0.47
PTPRA-201ENST00000216877 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.98■□□□□ 0.47
PTPRA-201ENST00000216877 MCM5P33992 734 aa17.98■□□□□ 0.47
PTPRA-201ENST00000216877 ZFP91Q96JP5 570 aaPredicted RBP17.98■□□□□ 0.47
PTPRA-201ENST00000216877 PTPRGP23470 1445 aa17.97■□□□□ 0.47
PTPRA-201ENST00000216877 NLRP1Q9C000 1473 aa17.97■□□□□ 0.47
PTPRA-201ENST00000216877 CARMIL2Q6F5E8 1435 aa17.97■□□□□ 0.47
PTPRA-201ENST00000216877 PKP1Q13835 747 aa17.97■□□□□ 0.47
PTPRA-201ENST00000216877 NUP155O75694 1391 aa17.96■□□□□ 0.47
PTPRA-201ENST00000216877 ZNF445P59923 1031 aa17.96■□□□□ 0.47
PTPRA-201ENST00000216877 ANKRD45Q5TZF3 282 aa17.96■□□□□ 0.47
PTPRA-201ENST00000216877 USP25Q9UHP3 1055 aa17.96■□□□□ 0.47
PTPRA-201ENST00000216877 MAP3K4Q9Y6R4 1608 aa17.95■□□□□ 0.46
PTPRA-201ENST00000216877 BLMP54132 1417 aaPredicted RBP17.95■□□□□ 0.46
PTPRA-201ENST00000216877 RARSP54136 660 aaKnown RBP17.95■□□□□ 0.46
PTPRA-201ENST00000216877 VWDEQ8N2E2 1590 aa17.95■□□□□ 0.46
PTPRA-201ENST00000216877 PRIMPOLQ96LW4 560 aa17.95■□□□□ 0.46
PTPRA-201ENST00000216877 SMC4Q9NTJ3 1288 aa17.95■□□□□ 0.46
PTPRA-201ENST00000216877 ZMYM4Q5VZL5 1548 aa17.94■□□□□ 0.46
PTPRA-201ENST00000216877 IQGAP3Q86VI3 1631 aa17.94■□□□□ 0.46
PTPRA-201ENST00000216877 TRIM6-TRIM34B2RNG4 842 aa17.94■□□□□ 0.46
PTPRA-201ENST00000216877 NUCB2P80303 420 aa17.94■□□□□ 0.46
PTPRA-201ENST00000216877 TRIM34Q9BYJ4 488 aa17.94■□□□□ 0.46
PTPRA-201ENST00000216877 DZIP1LQ8IYY4 767 aaKnown RBP17.93■□□□□ 0.46
PTPRA-201ENST00000216877 SPC24Q8NBT2 197 aa17.93■□□□□ 0.46
PTPRA-201ENST00000216877 SNX21Q969T3 373 aa17.93■□□□□ 0.46
PTPRA-201ENST00000216877 IRX5P78411 483 aaPredicted RBP17.93■□□□□ 0.46
PTPRA-201ENST00000216877 KIF16BQ96L93 1317 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 IRX3P78415 501 aaPredicted RBP17.92■□□□□ 0.46
PTPRA-201ENST00000216877 PDLIM2Q96JY6 352 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 TSPY26PQ9H489 355 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 PLEKHH2Q8IVE3 1493 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 LMBRD1Q9NUN5 540 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 TMEM63CQ9P1W3 806 aa17.92■□□□□ 0.46
PTPRA-201ENST00000216877 CCDC66A2RUB6 948 aa17.91■□□□□ 0.46
PTPRA-201ENST00000216877 ZKSCAN2Q63HK3 967 aa17.91■□□□□ 0.46
PTPRA-201ENST00000216877 LRSAM1Q6UWE0 723 aa17.91■□□□□ 0.46
PTPRA-201ENST00000216877 WWC1Q8IX03 1113 aa17.91■□□□□ 0.46
PTPRA-201ENST00000216877 ZNF592Q92610 1267 aa17.9■□□□□ 0.46
PTPRA-201ENST00000216877 DIAPH3Q9NSV4 1193 aa17.9■□□□□ 0.46
PTPRA-201ENST00000216877 STAG3Q9UJ98 1225 aa17.9■□□□□ 0.46
PTPRA-201ENST00000216877 U2SURPO15042 1029 aaKnown RBP17.9■□□□□ 0.46
PTPRA-201ENST00000216877 RIOK3O14730 519 aaKnown RBP17.89■□□□□ 0.46
PTPRA-201ENST00000216877 MVPQ14764 893 aaKnown RBP17.89■□□□□ 0.46
PTPRA-201ENST00000216877 ZNF521Q96K83 1311 aa17.89■□□□□ 0.46
PTPRA-201ENST00000216877 DISP3Q9P2K9 1392 aa17.89■□□□□ 0.46
PTPRA-201ENST00000216877 NPHP1O15259 732 aa17.89■□□□□ 0.45
PTPRA-201ENST00000216877 SIGLEC1Q9BZZ2 1709 aa17.89■□□□□ 0.45
PTPRA-201ENST00000216877 GDPD2Q9HCC8 539 aa17.89■□□□□ 0.45
PTPRA-201ENST00000216877 NSFL1CQ9UNZ2 370 aaKnown RBP17.89■□□□□ 0.45
PTPRA-201ENST00000216877 GPT2Q8TD30 523 aa17.88■□□□□ 0.45
PTPRA-201ENST00000216877 APBB1O00213 710 aa17.88■□□□□ 0.45
PTPRA-201ENST00000216877 TIGD1Q96MW7 591 aa17.88■□□□□ 0.45
PTPRA-201ENST00000216877 KIDINS220Q9ULH0 1771 aa17.88■□□□□ 0.45
PTPRA-201ENST00000216877 MLECQ14165 292 aa17.88■□□□□ 0.45
PTPRA-201ENST00000216877 CYB5RLQ6IPT4 315 aa17.87■□□□□ 0.45
PTPRA-201ENST00000216877 GGT6Q6P531 493 aa17.87■□□□□ 0.45
PTPRA-201ENST00000216877 ZGPATQ8N5A5 531 aaKnown RBP17.87■□□□□ 0.45
PTPRA-201ENST00000216877 ZFYVE16Q7Z3T8 1539 aa17.87■□□□□ 0.45
PTPRA-201ENST00000216877 DDIT3P35638 169 aa17.86■□□□□ 0.45
PTPRA-201ENST00000216877 RBM25P49756 843 aaKnown RBP17.86■□□□□ 0.45
PTPRA-201ENST00000216877 SYCP2Q9BX26 1530 aa17.86■□□□□ 0.45
PTPRA-201ENST00000216877 KIAA1107Q9UPP5 1409 aa17.86■□□□□ 0.45
PTPRA-201ENST00000216877 RICTORQ6R327 1708 aa17.86■□□□□ 0.45
PTPRA-201ENST00000216877 IFT172Q9UG01 1749 aa17.86■□□□□ 0.45
PTPRA-201ENST00000216877 DRC7Q8IY82 874 aa17.85■□□□□ 0.45
PTPRA-201ENST00000216877 DNAJC2Q99543 621 aaKnown RBP17.85■□□□□ 0.45
PTPRA-201ENST00000216877 KDM5CP41229 1560 aa17.85■□□□□ 0.45
PTPRA-201ENST00000216877 FRMPD1Q5SYB0 1578 aa17.85■□□□□ 0.45
PTPRA-201ENST00000216877 ADCY5O95622 1261 aa17.85■□□□□ 0.45
PTPRA-201ENST00000216877 CHMP4CQ96CF2 233 aa17.85■□□□□ 0.45
PTPRA-201ENST00000216877 PIBF1Q8WXW3 757 aa17.84■□□□□ 0.45
PTPRA-201ENST00000216877 TSR2Q969E8 191 aaKnown RBP17.84■□□□□ 0.45
PTPRA-201ENST00000216877 C1orf115Q9H7X2 142 aa17.84■□□□□ 0.45
PTPRA-201ENST00000216877 SYAP1Q96A49 352 aaPredicted RBP17.83■□□□□ 0.45
PTPRA-201ENST00000216877 TRMT2AQ8IZ69 625 aaKnown RBP17.83■□□□□ 0.44
PTPRA-201ENST00000216877 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
PTPRA-201ENST00000216877 TBC1D9Q6ZT07 1266 aa17.83■□□□□ 0.44
PTPRA-201ENST00000216877 ESF1Q9H501 851 aaKnown RBP17.83■□□□□ 0.44
PTPRA-201ENST00000216877 RIMBP3CA6NJZ7 1639 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 RIMBP3BA6NNM3 1639 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 RIMBP3Q9UFD9 1639 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 TMX1Q9H3N1 280 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 KIF13AQ9H1H9 1805 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 OGFRQ9NZT2 677 aa17.82■□□□□ 0.44
PTPRA-201ENST00000216877 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.82■□□□□ 0.443e-8■■■■■ 27.9
PTPRA-201ENST00000216877 V9GYY5 206 aaPredicted RBP17.82■□□□□ 0.44
PTPRA-201ENST00000216877 EIF2AK4Q9P2K8 1649 aaKnown RBP17.81■□□□□ 0.44
PTPRA-201ENST00000216877 NAA30Q147X3 362 aaPredicted RBP17.81■□□□□ 0.44
PTPRA-201ENST00000216877 IFT57Q9NWB7 429 aa17.81■□□□□ 0.44
PTPRA-201ENST00000216877 E9PCH4 1651 aa17.81■□□□□ 0.44
PTPRA-201ENST00000216877 C16orf45Q96MC5 204 aaPredicted RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms