RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ACEP12821 1306 aa31.95■■■□□ 2.7
VTI1B-201ENST00000216456 CABP2Q9NPB3 220 aa31.94■■■□□ 2.7
VTI1B-201ENST00000216456 BTG4Q9NY30 223 aa31.94■■■□□ 2.7
VTI1B-201ENST00000216456 TOPAZ1Q8N9V7 1692 aa31.94■■■□□ 2.7
VTI1B-201ENST00000216456 CRYBG1Q9Y4K1 1723 aa31.94■■■□□ 2.7
VTI1B-201ENST00000216456 CENPJQ9HC77 1338 aaPredicted RBP31.94■■■□□ 2.7
VTI1B-201ENST00000216456 NWD2Q9ULI1 1742 aa31.93■■■□□ 2.7
VTI1B-201ENST00000216456 SEPT12Q8IYM1 358 aa31.93■■■□□ 2.7
VTI1B-201ENST00000216456 CCDC61Q9Y6R9 512 aa31.93■■■□□ 2.7
VTI1B-201ENST00000216456 NBPF8Q3BBV2 869 aa31.92■■■□□ 2.7
VTI1B-201ENST00000216456 POLR3AO14802 1390 aaPredicted RBP31.91■■■□□ 2.7
VTI1B-201ENST00000216456 NRAPQ86VF7 1730 aa31.9■■■□□ 2.7
VTI1B-201ENST00000216456 SRPK2P78362 688 aaKnown RBP31.9■■■□□ 2.7
VTI1B-201ENST00000216456 BRWD3Q6RI45 1802 aa31.9■■■□□ 2.7
VTI1B-201ENST00000216456 PLEKHG3A1L390 1219 aa31.88■■■□□ 2.69
VTI1B-201ENST00000216456 CHRNA2Q15822 529 aa31.87■■■□□ 2.69
VTI1B-201ENST00000216456 QRICH2Q9H0J4 1663 aa31.86■■■□□ 2.69
VTI1B-201ENST00000216456 COL14A1Q05707 1796 aaKnown RBP31.86■■■□□ 2.69
VTI1B-201ENST00000216456 TRPM1Q7Z4N2 1603 aa31.86■■■□□ 2.69
VTI1B-201ENST00000216456 KIAA0232Q92628 1395 aa31.85■■■□□ 2.69
VTI1B-201ENST00000216456 PRDM11Q9NQV5 511 aa31.85■■■□□ 2.69
VTI1B-201ENST00000216456 PPIP5K1Q6PFW1 1433 aa31.84■■■□□ 2.69
VTI1B-201ENST00000216456 ZC3H6P61129 1189 aaKnown RBP31.84■■■□□ 2.69
VTI1B-201ENST00000216456 FAM98CQ17RN3 349 aaKnown RBP31.84■■■□□ 2.69
VTI1B-201ENST00000216456 ONECUT3O60422 494 aaPredicted RBP31.83■■■□□ 2.69
VTI1B-201ENST00000216456 PHRF1Q9P1Y6 1649 aaKnown RBP31.82■■■□□ 2.68
VTI1B-201ENST00000216456 A0A0G2JS52 829 aa31.81■■■□□ 2.68
VTI1B-201ENST00000216456 MYT1Q01538 1121 aa31.81■■■□□ 2.68
VTI1B-201ENST00000216456 ROCK2O75116 1388 aaKnown RBP31.8■■■□□ 2.68
VTI1B-201ENST00000216456 ABTB2Q8N961 1025 aa31.79■■■□□ 2.68
VTI1B-201ENST00000216456 CABP1Q9NZU7 370 aa31.79■■■□□ 2.68
VTI1B-201ENST00000216456 KRT27Q7Z3Y8 459 aa31.77■■■□□ 2.68
VTI1B-201ENST00000216456 SPATA31A5Q5VU36 1347 aa31.76■■■□□ 2.68
VTI1B-201ENST00000216456 SPATA31A7Q8IWB4 1347 aa31.76■■■□□ 2.68
VTI1B-201ENST00000216456 DEFB132Q7Z7B7 95 aa31.76■■■□□ 2.67
VTI1B-201ENST00000216456 STRN4Q9NRL3 753 aa31.76■■■□□ 2.67
VTI1B-201ENST00000216456 FAM182BQ5T319 152 aa31.75■■■□□ 2.67
VTI1B-201ENST00000216456 NRKQ7Z2Y5 1582 aa31.73■■■□□ 2.67
VTI1B-201ENST00000216456 CCDC125Q86Z20 511 aa31.72■■■□□ 2.67
VTI1B-201ENST00000216456 BLMP54132 1417 aaPredicted RBP31.72■■■□□ 2.67
VTI1B-201ENST00000216456 USP19O94966 1318 aa31.71■■■□□ 2.67
VTI1B-201ENST00000216456 SRCAPQ6ZRS2 3230 aa31.7■■■□□ 2.67
VTI1B-201ENST00000216456 EVC2Q86UK5 1308 aa31.69■■■□□ 2.66
VTI1B-201ENST00000216456 USP6P35125 1406 aa31.68■■■□□ 2.66
VTI1B-201ENST00000216456 USP35Q9P2H5 1018 aa31.67■■■□□ 2.66
VTI1B-201ENST00000216456 SPATA31A1Q5TZJ5 1347 aa31.67■■■□□ 2.66
VTI1B-201ENST00000216456 CAMTA1Q9Y6Y1 1673 aa31.66■■■□□ 2.66
VTI1B-201ENST00000216456 GCP02774 474 aa31.65■■■□□ 2.66
VTI1B-201ENST00000216456 NLRP13Q86W25 1043 aa31.64■■■□□ 2.66
VTI1B-201ENST00000216456 THSD7AQ9UPZ6 1657 aa31.64■■■□□ 2.65
VTI1B-201ENST00000216456 ZBTB7CA1YPR0 619 aa31.63■■■□□ 2.65
VTI1B-201ENST00000216456 LARP1Q6PKG0 1096 aaKnown RBP31.63■■■□□ 2.65
VTI1B-201ENST00000216456 SSH2Q76I76 1423 aa31.62■■■□□ 2.65
VTI1B-201ENST00000216456 ZRANB1Q9UGI0 708 aa31.62■■■□□ 2.65
VTI1B-201ENST00000216456 CPDO75976 1380 aa31.61■■■□□ 2.65
VTI1B-201ENST00000216456 EVA1CP58658 441 aa31.61■■■□□ 2.65
VTI1B-201ENST00000216456 NLRP6P59044 892 aa31.61■■■□□ 2.65
VTI1B-201ENST00000216456 LMO7Q8WWI1 1683 aa31.6■■■□□ 2.65
VTI1B-201ENST00000216456 SF3B2Q13435 895 aaKnown RBP31.59■■■□□ 2.65
VTI1B-201ENST00000216456 CARD11Q9BXL7 1154 aa31.59■■■□□ 2.65
VTI1B-201ENST00000216456 TONSLQ96HA7 1378 aa31.58■■■□□ 2.65
VTI1B-201ENST00000216456 PIK3C2AO00443 1686 aa31.57■■■□□ 2.65
VTI1B-201ENST00000216456 TRIM26Q12899 539 aaPredicted RBP31.55■■■□□ 2.64
VTI1B-201ENST00000216456 BRD4O60885 1362 aaPredicted RBP31.55■■■□□ 2.64
VTI1B-201ENST00000216456 TTC21BQ7Z4L5 1316 aa31.54■■■□□ 2.64
VTI1B-201ENST00000216456 SLIT3O75094 1523 aa31.53■■■□□ 2.64
VTI1B-201ENST00000216456 SOX12O15370 315 aa31.52■■■□□ 2.64
VTI1B-201ENST00000216456 COL5A2P05997 1499 aaPredicted RBP31.51■■■□□ 2.63
VTI1B-201ENST00000216456 AKAP12Q02952 1782 aa31.5■■■□□ 2.63
VTI1B-201ENST00000216456 CPSF1Q10570 1443 aaKnown RBP31.49■■■□□ 2.63
VTI1B-201ENST00000216456 EN1Q05925 392 aaPredicted RBP31.49■■■□□ 2.63
VTI1B-201ENST00000216456 BARGINQ6ZT62 677 aa31.48■■■□□ 2.63
VTI1B-201ENST00000216456 TCP11L2Q8N4U5 519 aa31.48■■■□□ 2.63
VTI1B-201ENST00000216456 ZNF692Q9BU19 519 aaPredicted RBP31.47■■■□□ 2.63
VTI1B-201ENST00000216456 AXIN2Q9Y2T1 843 aa31.47■■■□□ 2.63
VTI1B-201ENST00000216456 KTN1Q86UP2 1357 aaKnown RBP31.46■■■□□ 2.63
VTI1B-201ENST00000216456 SBNO2Q9Y2G9 1366 aa31.46■■■□□ 2.63
VTI1B-201ENST00000216456 BAG6P46379 1132 aa31.46■■■□□ 2.63
VTI1B-201ENST00000216456 TRIM37O94972 964 aa31.45■■■□□ 2.63
VTI1B-201ENST00000216456 AATKQ6ZMQ8 1374 aa31.44■■■□□ 2.62
VTI1B-201ENST00000216456 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.44■■■□□ 2.62
VTI1B-201ENST00000216456 CD163L1Q9NR16 1453 aa31.44■■■□□ 2.62
VTI1B-201ENST00000216456 TMC1Q8TDI8 760 aa31.43■■■□□ 2.62
VTI1B-201ENST00000216456 SLC12A5Q9H2X9 1139 aa31.43■■■□□ 2.62
VTI1B-201ENST00000216456 COL18A1P39060 1754 aa31.43■■■□□ 2.62
VTI1B-201ENST00000216456 PSDA5PKW4 1024 aaPredicted RBP31.42■■■□□ 2.62
VTI1B-201ENST00000216456 TNS1Q9HBL0 1735 aaKnown RBP31.41■■■□□ 2.62
VTI1B-201ENST00000216456 RGPD1P0DJD0 1748 aa31.41■■■□□ 2.62
VTI1B-201ENST00000216456 PDE3BQ13370 1112 aa31.4■■■□□ 2.62
VTI1B-201ENST00000216456 ARHGEF25Q86VW2 580 aa31.4■■■□□ 2.62
VTI1B-201ENST00000216456 TTC21AQ8NDW8 1320 aa31.4■■■□□ 2.62
VTI1B-201ENST00000216456 CRB1P82279 1406 aa31.4■■■□□ 2.62
VTI1B-201ENST00000216456 FAM196AQ6ZSG2 479 aa31.39■■■□□ 2.62
VTI1B-201ENST00000216456 NME9Q86XW9 330 aa31.39■■■□□ 2.62
VTI1B-201ENST00000216456 MON2Q7Z3U7 1717 aa31.38■■■□□ 2.61
VTI1B-201ENST00000216456 EZH2Q15910 746 aaKnown RBP31.38■■■□□ 2.61
VTI1B-201ENST00000216456 NFAT5O94916 1531 aa31.36■■■□□ 2.61
VTI1B-201ENST00000216456 ST20-MTHFSA0A0A6YYL1 179 aa31.36■■■□□ 2.61
VTI1B-201ENST00000216456 TOM1L2Q6ZVM7 507 aa31.36■■■□□ 2.61
VTI1B-201ENST00000216456 THRAP3Q9Y2W1 955 aaKnown RBP31.36■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms