RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 RCOR2Q8IZ40 523 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 OR8H3Q8N146 312 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 TMEM199Q8N511 208 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 TPD52L3Q96J77 140 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 BTBD10Q9BSF8 475 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 MARCH7Q9H992 704 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 TOR4AQ9NXH8 423 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 ATXN2Q99700 1313 aaKnown RBP11.33□□□□□ -0.6
MSH6-201ENST00000234420 SLC12A8A0AV02 714 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 ADM5C9JUS6 153 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 ACLYP53396 1101 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 PREPLQ4J6C6 727 aaPredicted RBP11.33□□□□□ -0.6
MSH6-201ENST00000234420 AGKQ53H12 422 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 HPS3Q969F9 1004 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 MED15Q96RN5 788 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 PNPLA8Q9NP80 782 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 EIF3LQ9Y262 564 aaKnown RBP11.33□□□□□ -0.6
MSH6-201ENST00000234420 COMMD3-BMI1R4GMX3 469 aa11.33□□□□□ -0.6
MSH6-201ENST00000234420 ARPC4-TTLL3A0A0A6YYG9 625 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 H3BN98 237 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 O00370 1275 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 HAT1O14929 419 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CCDC166P0CW27 439 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 MCL1Q07820 350 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 INSCQ1MX18 579 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 DENND6BQ8NEG7 585 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CASKIN2Q8WXE0 1202 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 SF3B1O75533 1304 aaKnown RBP eCLIP11.32□□□□□ -0.65e-6■■■■■ 53.2
MSH6-201ENST00000234420 H3BQF6 201 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CYB561D2O14569 222 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 RTN2O75298 545 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 PPM1BO75688 479 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 IL1BP01584 269 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CD4P01730 458 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 NCK1P16333 377 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 PIGKQ92643 395 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TMEM117Q9H0C3 514 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D22BQ9NU19 505 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 RABL2BQ9UNT1 228 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 UGGT1Q9NYU2 1555 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 A0A0X1KG70 313 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 OR6B1O95007 311 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 GRK4P32298 578 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CYP4F2P78329 520 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 BNC1Q01954 994 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CYP4F3Q08477 520 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 SWI5Q1ZZU3 235 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 FAM98BQ52LJ0 330 aaKnown RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 OTOP2Q7RTS6 562 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CYP4Z1Q86W10 505 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 DSELQ8IZU8 1212 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 AGPAT1Q99943 283 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 RGS17Q9UGC6 210 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 UGGT2Q9NYU1 1516 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 LIN7AO14910 233 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 RPS6KA4O75676 772 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 ZNF432O94892 652 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 VEGFAP15692 232 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 TBXAS1P24557 533 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 SETMARQ53H47 684 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 EGFL6Q8IUX8 553 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 PPCSQ9HAB8 311 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 GPRC5DQ9NZD1 345 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 ECDO95905 644 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 POLBP06746 335 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 GMFBP60983 142 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TUBA4AP68366 448 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 BOP1Q14137 746 aaKnown RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 CACHD1Q5VU97 1274 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 DENND1BQ6P3S1 775 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 EXOC3L1Q86VI1 746 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 ATP6V0D2Q8N8Y2 350 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 RNF145Q96MT1 663 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CGRRF1Q99675 332 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TMBIM4Q9HC24 238 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CYP4F12Q9HCS2 524 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TRMT6Q9UJA5 497 aaKnown RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 TFR2Q9UP52 801 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TBX22Q9Y458 520 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 CLTBP09497 229 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 DEFA5Q01523 94 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 SPIRE1Q08AE8 756 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 PTPAQ15257 358 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 C1orf189Q5VU69 101 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 HIPK1Q86Z02 1210 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 BPIFB6Q8NFQ5 453 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 SMPDL3BQ92485 455 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 PROX1Q92786 737 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 SLITRK2Q9H156 845 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 TRIT1Q9H3H1 467 aaKnown RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 SH3GLB2Q9NR46 395 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 DPP3Q9NY33 737 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 UBP1Q9NZI7 540 aa11.32□□□□□ -0.6
MSH6-201ENST00000234420 GPC6Q9Y625 555 aaPredicted RBP11.32□□□□□ -0.6
MSH6-201ENST00000234420 OR10H2O60403 315 aa11.31□□□□□ -0.6
MSH6-201ENST00000234420 PEX14O75381 377 aa11.31□□□□□ -0.6
MSH6-201ENST00000234420 MTA2O94776 668 aa11.31□□□□□ -0.6
MSH6-201ENST00000234420 NPR3P17342 541 aa11.31□□□□□ -0.6
MSH6-201ENST00000234420 POLR2EP19388 210 aaKnown RBP11.31□□□□□ -0.6
MSH6-201ENST00000234420 ZNF846Q147U1 533 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms