RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CCDC13Q8IYE1 715 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 NTAN1Q96AB6 310 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 PGAP3Q96FM1 320 aaPredicted RBP23.32■■□□□ 1.32
CDX1-201ENST00000231656 QKIQ96PU8 341 aaKnown RBP eCLIP23.32■■□□□ 1.32
CDX1-201ENST00000231656 WDR6Q9NNW5 1121 aaKnown RBP23.32■■□□□ 1.32
CDX1-201ENST00000231656 ARHGEF4Q9NR80 690 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 OSER1Q9NX31 292 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 EURLQ9NYK6 297 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 COX16Q9P0S2 106 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 CTNNAL1Q9UBT7 734 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 MAGED2Q9UNF1 606 aaPredicted RBP23.32■■□□□ 1.32
CDX1-201ENST00000231656 MFHAS1Q9Y4C4 1052 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 INSL5Q9Y5Q6 135 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 MTCL1Q9Y4B5 1905 aaKnown RBP23.32■■□□□ 1.32
CDX1-201ENST00000231656 BANF1O75531 89 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 BMP8BP34820 402 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 GPM6BQ13491 265 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 RAB30Q15771 203 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 EXOC3L1Q86VI1 746 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 ARHGAP18Q8N392 663 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 RNF139Q8WU17 664 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 OLFM3Q96PB7 478 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 CCDC77Q9BR77 488 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 WDR83Q9BRX9 315 aaKnown RBP23.32■■□□□ 1.32
CDX1-201ENST00000231656 EPN3Q9H201 632 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 NKX2-4Q9H2Z4 354 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 CERS4Q9HA82 394 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 DTLQ9NZJ0 730 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 MSRAQ9UJ68 235 aa23.32■■□□□ 1.32
CDX1-201ENST00000231656 H3BRJ5 948 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 CHADO15335 359 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 AIF1P55008 147 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 HNRNPH2P55795 449 aaKnown RBP23.31■■□□□ 1.32
CDX1-201ENST00000231656 SCAPQ12770 1279 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 TWF1Q12792 350 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 ADAM32Q8TC27 787 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 FBXW11Q9UKB1 542 aa23.31■■□□□ 1.32
CDX1-201ENST00000231656 LPXNO60711 386 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 CSH1P0DML2 217 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 CSH2P0DML3 217 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 HMGA1P17096 107 aaKnown RBP23.3■■□□□ 1.32
CDX1-201ENST00000231656 ADRA1BP35368 520 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 PPARDQ03181 441 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 CBLBQ13191 982 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 EFHC2Q5JST6 749 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 FOXR1Q6PIV2 292 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 MDM1Q8TC05 714 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 BCAS4Q8TDM0 211 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 LRRN4Q8WUT4 740 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 ANLNQ9NQW6 1124 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 TLR8Q9NR97 1041 aaKnown RBP23.3■■□□□ 1.32
CDX1-201ENST00000231656 CLUHO75153 1309 aa23.3■■□□□ 1.32
CDX1-201ENST00000231656 E7EVH7 732 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 CDH16O75309 829 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 GCAP28676 217 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 ATP5DP30049 168 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 MAGEA6P43360 314 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 CCDC38Q502W7 563 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 PPP2R2DQ66LE6 453 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 ANKMY2Q8IV38 441 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 DQX1Q8TE96 717 aaKnown RBP23.29■■□□□ 1.32
CDX1-201ENST00000231656 CENPTQ96BT3 561 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 SELENOSQ9BQE4 189 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 RAB6BQ9NRW1 208 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 DDIT4Q9NX09 232 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 I6L893 689 aaPredicted RBP23.29■■□□□ 1.32
CDX1-201ENST00000231656 GCATO75600 419 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 GLUD1P00367 558 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 PSEN1P49768 467 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 CLCN4P51793 760 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 GPX6P59796 221 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 DPYSQ14117 519 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 VEPH1Q14D04 833 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 FAM182AQ5T1J6 154 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 TAOK1Q7L7X3 1001 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 TAC4Q86UU9 113 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 TDHQ8IZJ6 230 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 CYP4X1Q8N118 509 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 PDIK1LQ8N165 341 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 RIBC1Q8N443 379 aaPredicted RBP23.29■■□□□ 1.32
CDX1-201ENST00000231656 KREMEN2Q8NCW0 462 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 ARHGEF2Q92974 986 aaKnown RBP23.29■■□□□ 1.32
CDX1-201ENST00000231656 MYRFLQ96LU7 910 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 RABEP2Q9H5N1 569 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 CLIC5Q9NZA1 410 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 MYO9BQ13459 2157 aa23.29■■□□□ 1.32
CDX1-201ENST00000231656 MFSD11O43934 449 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 ZDHHC11BP0C7U3 371 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 EPHB3P54753 998 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 SEMA3BQ13214 749 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 C4orf22Q6V702 233 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 TDRPQ86YL5 185 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 CCDC110Q8TBZ0 833 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 PYROXD1Q8WU10 500 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 VPS37BQ9H9H4 285 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.28■■□□□ 1.32
CDX1-201ENST00000231656 NUDT5Q9UKK9 219 aa23.28■■□□□ 1.32
CDX1-201ENST00000231656 EXOC1LA0A1B0GW35 172 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 HACD1B0YJ81 288 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 F9P00740 461 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms