RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TAF10Q12962 218 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 DGKKQ5KSL6 1271 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 MOXD1Q6UVY6 613 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 GLT6D1Q7Z4J2 308 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 COMMD2Q86X83 199 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 TMEM145Q8NBT3 493 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 KCNB2Q92953 911 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 C18orf25Q96B23 403 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 HHIPL1Q96JK4 782 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 RUSC1Q9BVN2 902 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 NXF3Q9H4D5 531 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CYLDQ9NQC7 956 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ZNF217O75362 1048 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 NFICP08651 508 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 PTGER2P43116 358 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 RPS15P62841 145 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 UBE3AQ05086 875 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 BTKQ06187 659 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TJAP1Q5JTD0 557 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 KLHL24Q6TFL4 600 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CMTR2Q8IYT2 770 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CELF6Q96J87 481 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ULBP1Q9BZM6 244 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 NRDE2Q9H7Z3 1164 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 KRCC1Q9NPI7 259 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 MIEF1Q9NQG6 463 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CEP72Q9P209 647 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ADAMTS1Q9UHI8 967 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM32AQ9Y421 112 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CAMTA1Q9Y6Y1 1673 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 NRP1O14786 923 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 GJB6O95452 261 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CES1P23141 567 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 GJA9P57773 515 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ART3Q13508 389 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 GNA13Q14344 377 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 EPC2Q52LR7 807 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TREML1Q86YW5 311 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ELMO1Q92556 727 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ZFYVE19Q96K21 471 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CALR3Q96L12 384 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 VPS18Q9P253 973 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ADGRA3Q8IWK6 1321 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 F8W810 466 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 GOLGA8TH3BQL2 631 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 GUCY1B2O75343 617 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 MAFO75444 373 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 E2F6O75461 281 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC25A14O95258 325 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ZNF7P17097 686 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 PON2Q15165 354 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CCDC38Q502W7 563 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TCP11X2Q5H9J9 407 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TAS1R3Q7RTX0 852 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 HDXQ7Z353 690 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ECHDC2Q86YB7 292 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 RSRC1Q96IZ7 334 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 LMLNQ96KR4 655 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 EBF3Q9H4W6 596 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 FBXL12Q9NXK8 326 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 KIF17Q9P2E2 1029 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 NOX1Q9Y5S8 564 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ZNF609O15014 1411 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 IQCF3P0C7M6 154 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 IGFALSP35858 605 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TAF13Q15543 124 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 VARS2Q5ST30 1063 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TMEM63BQ5T3F8 832 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ZPBP2Q6X784 338 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 TMEM126BQ8IUX1 230 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 LMNTD2Q8IXW0 634 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 PLEKHA8Q96JA3 519 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 CABS1Q96KC9 395 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 PANX3Q96QZ0 392 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 AGPAT1Q99943 283 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 SAYSD1Q9NPB0 183 aa9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 NFKBIL1Q9UBC1 381 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-202ENST00000381753 ARL5CA6NH57 179 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 GRXCR1A8MXD5 290 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 RNF40O75150 1001 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 SOAT2O75908 522 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CHRNA1P02708 482 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ASLP04424 464 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ZBED6P86452 979 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TROAPQ12815 778 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 LMAN2Q12907 356 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 IFT88Q13099 833 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 USP10Q14694 798 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TTC23Q5W5X9 447 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ICA1LQ8NDH6 482 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 MAPK15Q8TD08 544 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 C2orf15Q8WU43 125 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM172AQ8WUF8 416 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 DDX1Q92499 740 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 KLHL5Q96PQ7 755 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 BTBD9Q96Q07 612 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CDH19Q9H159 772 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 KCNN2Q9H2S1 579 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 RBM22Q9NW64 420 aaKnown RBP eCLIP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms