RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 PCNX2A6NKB5 2137 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 PIK3R2O00459 728 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 FSBPO95073 299 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 DNTTP04053 509 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 ATP5BP06576 529 aaKnown RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 SETSIPP0DME0 302 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 VDRP11473 427 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 PABPC1P11940 636 aaKnown RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 POLR2EP19388 210 aaKnown RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 RGS7P49802 495 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 CAMK2GQ13555 558 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 COL9A2Q14055 689 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 SUZ12Q15022 739 aaKnown RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 TTC31Q49AM3 519 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 MBLAC2Q68D91 279 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 LRSAM1Q6UWE0 723 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 BHLHA9Q7RTU4 235 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 PROSER1Q86XN7 944 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 RBBP8NLQ8NC74 664 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-202ENST00000562722 RHBDD1Q8TEB9 315 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 GANCQ8TET4 914 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 BTBD1Q9H0C5 482 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 PCED1AQ9H1Q7 454 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 GDPD2Q9HCC8 539 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 CNGB3Q9NQW8 809 aa13.53□□□□□ -0.24
SF3B3-202ENST00000562722 WDFY3Q8IZQ1 3526 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 O00370 1275 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 FLRT2O43155 660 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 TBL1XO60907 577 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 CBFA2T3O75081 653 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 SEMA4FO95754 770 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 LATS1O95835 1130 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 DLDP09622 509 aaKnown RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ZNF883P0CG24 379 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 HOXB3P14651 431 aaPredicted RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 TBXAS1P24557 533 aaPredicted RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ACSL1P33121 698 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 PRCPP42785 496 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 SLC11A2P49281 568 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 FKBP3Q00688 224 aaKnown RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 BNC1Q01954 994 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 RFWD3Q6PCD5 774 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 TMEM270Q6UE05 265 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ADAT2Q7Z6V5 191 aaKnown RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 SLCO6A1Q86UG4 719 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ADIPOR2Q86V24 386 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 KCTD13Q8WZ19 329 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 CDC6Q99741 560 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 TMEM245Q9H330 911 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 CCDC86Q9H6F5 360 aaKnown RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 FBRSQ9HAH7 460 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 STIM2Q9P246 746 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ARMCX3Q9UH62 379 aaPredicted RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 STOML2Q9UJZ1 356 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.52□□□□□ -0.25
SF3B3-202ENST00000562722 PCDHB4Q9Y5E5 795 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 CACNA1GO43497 2377 aa13.52□□□□□ -0.25
SF3B3-202ENST00000562722 AKAP13Q12802 2813 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 GOLGA6L7A0A1B0GV03 622 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 TYW5A2RUC4 315 aaKnown RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 GOLGA6L4A6NEF3 574 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 M0QYV0 167 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 TAF4O00268 1085 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 SMC2O95347 1197 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 CD70P32970 193 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 SGSHP51688 502 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 TBX4P57082 545 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 DAOAP59103 153 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 MCCD1P59942 119 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ST8SIA6P61647 398 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 RPS14P62263 151 aaKnown RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ZBTB16Q05516 673 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 PTPRNQ16849 979 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 KIF19Q2TAC6 998 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 CCDC157Q569K6 752 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ZNF658Q5TYW1 1059 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 NUGGCQ68CJ6 796 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ZNF776Q68DI1 518 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ANKRD40Q6AI12 368 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 C19orf48Q6RUI8 117 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 CCNI2Q6ZMN8 369 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 GLRX5Q86SX6 157 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 MFN1Q8IWA4 741 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 CCDC117Q8IWD4 279 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 UNC45BQ8IWX7 931 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 TM9SF3Q9HD45 589 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 PRSS16Q9NQE7 514 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 SUN2Q9UH99 717 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 KIAA1257Q9ULG3 409 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.51□□□□□ -0.25
SF3B3-202ENST00000562722 NCKAP1Q9Y2A7 1128 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 ANKRD6Q9Y2G4 727 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 COQ4Q9Y3A0 265 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 PCDHGB2Q9Y5G2 931 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 SNX11Q9Y5W9 270 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 SLCO1B1Q9Y6L6 691 aa13.51□□□□□ -0.25
SF3B3-202ENST00000562722 TRIM49BA6NDI0 452 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 FAM47DPA6NHR8 397 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 RNASEH1O60930 286 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms