RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FAM209AQ5JX71 171 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 EFCAB12Q6NXP0 572 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TMEM154Q6P9G4 183 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 C6orf89Q6UWU4 347 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 MPZL3Q6UWV2 235 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 PRUNE1Q86TP1 453 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 DTX3Q8N9I9 347 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 NTPCRQ9BSD7 190 aaKnown RBP10.74□□□□□ -0.69
LIG1-220ENST00000601091 NT5C1AQ9BXI3 368 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 CLEC11AQ9Y240 323 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 CCDC85CA6NKD9 419 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 YDJCA8MPS7 323 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TRIM49D1C9J1S8 452 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TM9SF1O15321 606 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 KRT16P08779 473 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TMEM132DQ14C87 1099 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 FAM182AQ5T1J6 154 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 EGFLAMQ63HQ2 1017 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 RAPH1Q70E73 1250 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 PIGWQ7Z7B1 504 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 MTDHQ86UE4 582 aaKnown RBP10.74□□□□□ -0.69
LIG1-220ENST00000601091 CPNE8Q86YQ8 564 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 AFAP1L2Q8N4X5 818 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 DNERQ8NFT8 737 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 LMO3Q8TAP4 145 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 CLEC4DQ8WXI8 215 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 BSNDQ8WZ55 320 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 PMEPA1Q969W9 287 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TCF12Q99081 682 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 NELL2Q99435 816 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 DMAP1Q9NPF5 467 aaPredicted RBP10.74□□□□□ -0.69
LIG1-220ENST00000601091 USP18Q9UMW8 372 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 STARD13Q9Y3M8 1113 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 H3BUI4 141 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 OPHN1O60890 802 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 PRLP01236 227 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 ITGB3P05106 788 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 ETS1P14921 441 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 GLRA2P23416 452 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 POU5F1BQ06416 359 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 BLMHQ13867 455 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 KCTD21Q4G0X4 260 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TAF1BQ53T94 588 aaPredicted RBP10.74□□□□□ -0.69
LIG1-220ENST00000601091 ARMC4Q5T2S8 1044 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 C1orf146Q5VVC0 180 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 RNF43Q68DV7 783 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 DPP9Q86TI2 863 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 ALDH16A1Q8IZ83 802 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 HPDLQ96IR7 371 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 FAM96AQ9H5X1 160 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 WDR6Q9NNW5 1121 aaKnown RBP10.74□□□□□ -0.69
LIG1-220ENST00000601091 TMEM5Q9Y2B1 443 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 HBP1O60381 514 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 IFNA8P32881 189 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 TUBA4AP68366 448 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 CSTF3Q12996 717 aaKnown RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 ORC1Q13415 861 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ARMCX2Q7L311 632 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ALLCQ8N6M5 410 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 BEST2Q8NFU1 509 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 OR5B17Q8NGF7 314 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ASAP3Q8TDY4 903 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 DQX1Q8TE96 717 aaKnown RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 FHDC1Q9C0D6 1143 aaPredicted RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 TLK1Q9UKI8 766 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 A8MXQ7 604 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 PDLIM1O00151 329 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 DHX15O43143 795 aaKnown RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 UNC5CO95185 931 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 SERPINB4P48594 390 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 KDSRQ06136 332 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ASPHQ12797 758 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 PTP4A2Q12974 167 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 STX3Q13277 289 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 PLEKHA7Q6IQ23 1121 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 STK32CQ86UX6 486 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 COLGALT2Q8IYK4 626 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 SIX6OS1Q8N1H7 587 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 TEX9Q8N6V9 391 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 TCP10LQ8TDR4 215 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 FAM49AQ9H0Q0 323 aaPredicted RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 TMEM134Q9H6X4 195 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.73□□□□□ -0.695e-7■■■■□ 21.5
LIG1-220ENST00000601091 SNX9Q9Y5X1 595 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 DOCK2Q92608 1830 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 B2RBV5 119 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 M0QX08 132 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 GUCY1B2O75343 617 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 PDE5AO76074 875 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ENO1P06733 434 aaKnown RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 COL6A1P12109 1028 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 MX2P20592 715 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 RPA3P35244 121 aaPredicted RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 SERPINB9P50453 376 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 PTPN11Q06124 597 aaPredicted RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 LAMTOR4Q0VGL1 99 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 ZC3H12BQ5HYM0 836 aaKnown RBP10.73□□□□□ -0.69
LIG1-220ENST00000601091 SCAIQ8N9R8 606 aa10.73□□□□□ -0.69
LIG1-220ENST00000601091 DTX3LQ8TDB6 740 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms