RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 C1orf220Q5T0J3 134 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 RSRC2Q7L4I2 434 aaKnown RBP13.65□□□□□ -0.22
SF3B3-202ENST00000562722 CCDC186Q7Z3E2 898 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 PIP4P1Q86T03 277 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 SLC41A1Q8IVJ1 513 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 KDF1Q8NAX2 398 aaPredicted RBP13.65□□□□□ -0.22
SF3B3-202ENST00000562722 ZCCHC14Q8WYQ9 949 aaKnown RBP13.65□□□□□ -0.22
SF3B3-202ENST00000562722 FOXJ1Q92949 421 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 MRGPRX1Q96LB2 322 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 SPATA32Q96LK8 384 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 FAM124BQ9H5Z6 455 aaPredicted RBP13.65□□□□□ -0.22
SF3B3-202ENST00000562722 APOBEC3GQ9HC16 384 aaKnown RBP13.65□□□□□ -0.22
SF3B3-202ENST00000562722 CD93Q9NPY3 652 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 SUSD2Q9UGT4 822 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 TRAF3IP3Q9Y228 551 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 ZNF510Q9Y2H8 683 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 STON1Q9Y6Q2 735 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 LAMA1P25391 3075 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 CEP295Q9C0D2 2601 aa13.65□□□□□ -0.22
SF3B3-202ENST00000562722 TNRC6BQ9UPQ9 1833 aaKnown RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 A0A1W2PQD8 194 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 UPK3BL1B0FP48 263 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 UPK3BL2E5RIL1 263 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 GFRA2O00451 464 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 MAPK13O15264 365 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 SYNCRIPO60506 623 aaKnown RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CYBBP04839 570 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CISD3P0C7P0 127 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CMA1P23946 247 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 RPL13P26373 211 aaKnown RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CD6P30203 668 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CORO1AP31146 461 aaKnown RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CHKAP35790 457 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PSMC2P35998 433 aaKnown RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 SYKP43405 635 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 COG7P83436 770 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PPP3CAQ08209 521 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PPP1R26Q5T8A7 1209 aaPredicted RBP13.64□□□□□ -0.23
SF3B3-202ENST00000562722 Q6ZNB5 142 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 SCD5Q86SK9 330 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 UCMAQ8WVF2 138 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 DUSP16Q9BY84 665 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 DCLK3Q9C098 648 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PRDM16Q9HAZ2 1276 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CD248Q9HCU0 757 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 CLIC5Q9NZA1 410 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 KLK13Q9UKR3 277 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 STRIP2Q9ULQ0 834 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 NEUROG3Q9Y4Z2 214 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PCDHB9Q9Y5E1 797 aa13.64□□□□□ -0.23
SF3B3-202ENST00000562722 PLXND1Q9Y4D7 1925 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 H0Y626 953 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 TRIM16O95361 564 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 PRR29P0C7W0 189 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 MAOBP27338 520 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 SLC8A3P57103 927 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 ARID5AQ03989 594 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 ADAM9Q13443 819 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 FUT11Q495W5 492 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 CACUL1Q86Y37 369 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 DENND1CQ8IV53 801 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 ARHGAP18Q8N392 663 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 GATA6Q92908 595 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 TOE1Q96GM8 510 aaKnown RBP13.63□□□□□ -0.23
SF3B3-202ENST00000562722 ZNF419Q96HQ0 510 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-202ENST00000562722 TMEM121BQ9BXQ6 578 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-202ENST00000562722 CIPCQ9C0C6 399 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 MIR1-1HGQ9H1L0 117 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 TMEM8AQ9HCN3 771 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 MYH10P35580 1976 aa13.63□□□□□ -0.23
SF3B3-202ENST00000562722 SLC12A8A0AV02 714 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 RHOBTB3O94955 611 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 PENKP01210 267 aaPredicted RBP13.62□□□□□ -0.23
SF3B3-202ENST00000562722 KLKB1P03952 638 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 NCAM1P13591 858 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 IL12RB1P42701 662 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 MFAP3P55082 362 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 KRT85P78386 507 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 HNRNPDQ14103 355 aaKnown RBP13.62□□□□□ -0.23
SF3B3-202ENST00000562722 GEN1Q17RS7 908 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 FYB2Q5VWT5 728 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 KRT39Q6A163 491 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 ANKS1BQ7Z6G8 1248 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 CHCHD4Q8N4Q1 142 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 DDI1Q8WTU0 396 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 GPR174Q9BXC1 333 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 CISHQ9NSE2 258 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 DNAAF2Q9NVR5 837 aaKnown RBP13.62□□□□□ -0.23
SF3B3-202ENST00000562722 MARCH2Q9P0N8 246 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 AGO1Q9UL18 857 aaKnown RBP13.62□□□□□ -0.23
SF3B3-202ENST00000562722 HPSEQ9Y251 543 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 SLC27A6Q9Y2P4 619 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 MSRB2Q9Y3D2 182 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 USP3Q9Y6I4 520 aa13.62□□□□□ -0.23
SF3B3-202ENST00000562722 CFAP47Q6ZTR5 3102 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 MYO18AQ92614 2054 aaKnown RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 SRRM3A6NNA2 597 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 NPC1O15118 1278 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 SH3BP5O60239 455 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 ACADMP11310 421 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms