RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 C11orf84Q9BUA3 381 aaPredicted RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.55■■□□□ 1.36
CDX1-201ENST00000231656 RIPK2O43353 540 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 LCP1P13796 627 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 PTPN9P43378 593 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 RABGGTBP53611 331 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 SKOR1P84550 965 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 AGBL2Q5U5Z8 902 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 RFX6Q8HWS3 928 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 HERC2P3Q9BVR0 1158 aa23.54■■□□□ 1.36
CDX1-201ENST00000231656 NGRNQ9NPE2 291 aaKnown RBP23.54■■□□□ 1.36
CDX1-201ENST00000231656 LAMA3Q16787 3333 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 SHOX2O60902 331 aaPredicted RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 CPB1P15086 417 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 ARPP19P56211 112 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 DPYSL3Q14195 570 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 SLC29A2Q14542 456 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 PSMD5Q16401 504 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 HIBCHQ6NVY1 386 aaPredicted RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 TRMT10CQ7L0Y3 403 aaKnown RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 CCDC25Q86WR0 208 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 TEKT4Q8WW24 435 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 FUBP3Q96I24 572 aaKnown RBP eCLIP23.53■■□□□ 1.36
CDX1-201ENST00000231656 PKNOX2Q96KN3 472 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 NCAPGQ9BPX3 1015 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 TSPYL1Q9H0U9 437 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 DMAP1Q9NPF5 467 aaPredicted RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 ABI2Q9NYB9 513 aaPredicted RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 SAE1Q9UBE0 346 aaPredicted RBP23.53■■□□□ 1.36
CDX1-201ENST00000231656 MTRRQ9UBK8 725 aa23.53■■□□□ 1.36
CDX1-201ENST00000231656 HHLA1C9JL84 531 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 C2CD2LO14523 706 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 FGF18O76093 207 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 ZSCAN5DPP0CG00 497 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CYP2F1P24903 491 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 GLUD2P49448 558 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CDH6P55285 790 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 HDAC4P56524 1084 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 DSG1Q02413 1049 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 IFFO1Q0D2I5 559 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 ADIGQ0VDE8 80 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 GPR17Q13304 367 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 P3H1Q32P28 736 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 BOLA3Q53S33 107 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 KDM7AQ6ZMT4 941 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 TNS4Q8IZW8 715 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 FBXO22Q8NEZ5 403 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CENPIQ92674 756 aaPredicted RBP23.52■■□□□ 1.36
CDX1-201ENST00000231656 PGLYRP2Q96PD5 576 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CALN1Q9BXU9 219 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 ADAM7Q9H2U9 754 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CDC42EP4Q9H3Q1 356 aaKnown RBP23.52■■□□□ 1.36
CDX1-201ENST00000231656 PCDHB5Q9Y5E4 795 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 BACE2Q9Y5Z0 518 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 CDY1Q9Y6F8 540 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 PATJQ8NI35 1801 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 ETS1P14921 441 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 MMRN1Q13201 1228 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 SHHQ15465 462 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 KRT71Q3SY84 523 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 SLC8B1Q6J4K2 584 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 VPS52Q8N1B4 723 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 TBCBQ99426 244 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 TMEM121Q9BTD3 319 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 LRRC4Q9HBW1 653 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 PCDH9Q9HC56 1237 aa23.52■■□□□ 1.36
CDX1-201ENST00000231656 PLXNA4Q9HCM2 1894 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 APOC4-APOC2K7ER74 178 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 DNALI1O14645 258 aaPredicted RBP23.51■■□□□ 1.35
CDX1-201ENST00000231656 APOC2P02655 101 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 PECAM1P16284 738 aaPredicted RBP23.51■■□□□ 1.35
CDX1-201ENST00000231656 RPL17P18621 184 aaKnown RBP23.51■■□□□ 1.35
CDX1-201ENST00000231656 TFE3P19532 575 aaPredicted RBP23.51■■□□□ 1.35
CDX1-201ENST00000231656 RAB41Q5JT25 222 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 GPRIN1Q7Z2K8 1008 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 TMEM109Q9BVC6 243 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 ADAM33Q9BZ11 813 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 CENPHQ9H3R5 247 aa23.51■■□□□ 1.35
CDX1-201ENST00000231656 GBF1Q92538 1859 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 ADAM12O43184 909 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 NR1D1P20393 614 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 NDUFV1P49821 464 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 ADCY1Q08828 1119 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 PDK2Q15119 407 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 DNAJC21Q5F1R6 531 aaKnown RBP23.5■■□□□ 1.35
CDX1-201ENST00000231656 SCYL2Q6P3W7 929 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 RNF19BQ6ZMZ0 732 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 KLHL23Q8NBE8 558 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 ATAD1Q8NBU5 361 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 DDX23Q9BUQ8 820 aaKnown RBP23.5■■□□□ 1.35
CDX1-201ENST00000231656 SNRNP25Q9BV90 132 aaKnown RBP23.5■■□□□ 1.35
CDX1-201ENST00000231656 PNPLA8Q9NP80 782 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 CHD7Q9P2D1 2997 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 MDM4O15151 490 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 URODP06132 367 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 DESP17661 470 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 IL4RP24394 825 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 OR1D2P34982 312 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 GRIK1P39086 918 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 TKTL1P51854 596 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms