RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 USTQ9Y2C2 406 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 CPQQ9Y646 472 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 ZFP37Q9Y6Q3 630 aaPredicted RBP15.65■□□□□ 0.1
NUP54-213ENST00000513352 C5orf42Q9H799 3197 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 SYNJ2BP-COX16A0A087WUM0 186 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 NDUFA10O95299 355 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 PRAMEF12O95522 483 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 KRT3P12035 628 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 PFKLP17858 780 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 GALCP54803 685 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 CCDC173Q0VFZ6 552 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 RAD9BQ6WBX8 426 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 TMEM139Q8IV31 216 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 EMC1Q8N766 993 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 ADAM32Q8TC27 787 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 SMARCD2Q92925 531 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 ASB16Q96NS5 453 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 MCEEQ96PE7 176 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 PACSIN1Q9BY11 444 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 FAM204AQ9H8W3 233 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 PARVAQ9NVD7 372 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.64■□□□□ 0.09
NUP54-213ENST00000513352 COX16Q9P0S2 106 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 SFMBT1Q9UHJ3 866 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 EPN1Q9Y6I3 576 aaPredicted RBP15.64■□□□□ 0.09
NUP54-213ENST00000513352 SCINQ9Y6U3 715 aa15.64■□□□□ 0.09
NUP54-213ENST00000513352 SLC12A8A0AV02 714 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 EIF3CLB5ME19 914 aaKnown RBP15.63■□□□□ 0.09
NUP54-213ENST00000513352 VIPR2P41587 438 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 MAGEA1P43355 309 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 SULT1E1P49888 294 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 GSCP56915 257 aaPredicted RBP15.63■□□□□ 0.09
NUP54-213ENST00000513352 GPC5P78333 572 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 SYPL2Q5VXT5 272 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 POTEHQ6S545 545 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 MTSS1LQ765P7 747 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 LRRC8AQ8IWT6 810 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 ADHFE1Q8IWW8 467 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 PLCD3Q8N3E9 789 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 JOSD2Q8TAC2 188 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 DQX1Q8TE96 717 aaKnown RBP15.63■□□□□ 0.09
NUP54-213ENST00000513352 SH3RF2Q8TEC5 729 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 PDLIM2Q96JY6 352 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 SLC2A13Q96QE2 648 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 EIF3CQ99613 913 aaKnown RBP15.63■□□□□ 0.09
NUP54-213ENST00000513352 KXD1Q9BQD3 176 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 ZFP14Q9HCL3 533 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 TDP1Q9NUW8 608 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 EPS15L1Q9UBC2 864 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 LIMD1Q9UGP4 676 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 STAP1Q9ULZ2 295 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 NENFQ9UMX5 172 aa15.63■□□□□ 0.09
NUP54-213ENST00000513352 SOBPA7XYQ1 873 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 ZNF263O14978 683 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 MSI1O43347 362 aaKnown RBP15.62■□□□□ 0.09
NUP54-213ENST00000513352 FYNP06241 537 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 PDGFRAP16234 1089 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 DESP17661 470 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 NOS2P35228 1153 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 FLT3P36888 993 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 MATKP42679 507 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 SLC7A9P82251 487 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 NME3Q13232 169 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 TANGO2Q6ICL3 276 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 PLEKHA7Q6IQ23 1121 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 MSANTD2Q6P1R3 559 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 KLHDC10Q6PID8 442 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 PARM1Q6UWI2 310 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 KIAA1328Q86T90 577 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 TAC4Q86UU9 113 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 DDX42Q86XP3 938 aaKnown RBP eCLIP15.62■□□□□ 0.09
NUP54-213ENST00000513352 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.62■□□□□ 0.09
NUP54-213ENST00000513352 CELF5Q8N6W0 485 aaKnown RBP15.62■□□□□ 0.09
NUP54-213ENST00000513352 ACRBPQ8NEB7 543 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 RXFP2Q8WXD0 754 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 USP13Q92995 863 aaPredicted RBP15.62■□□□□ 0.09
NUP54-213ENST00000513352 RNF34Q969K3 372 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 ARHGEF26Q96DR7 871 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 CFAP57Q96MR6 1250 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 SERPINB11Q96P15 392 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 NUP85Q9BW27 656 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 KIF9Q9HAQ2 790 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 MRPL47Q9HD33 250 aaKnown RBP15.62■□□□□ 0.09
NUP54-213ENST00000513352 GKN1Q9NS71 199 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 DDIT4Q9NX09 232 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 CTTNBP2NLQ9P2B4 639 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 CFAP97Q9P2B7 532 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 PRKAG3Q9UGI9 489 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 TMEM59LQ9UK28 342 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 ARHGAP26Q9UNA1 814 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 CCL26Q9Y258 94 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 PCDHA13Q9Y5I0 950 aa15.62■□□□□ 0.09
NUP54-213ENST00000513352 SIGLEC16A6NMB1 481 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 HEPACAM2A8MVW5 462 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 LEFTY2O00292 366 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 SCAMP3O14828 347 aaKnown RBP15.61■□□□□ 0.09
NUP54-213ENST00000513352 OLFM2O95897 454 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 TMEM253P0C7T8 217 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 GPD1P21695 349 aa15.61■□□□□ 0.09
NUP54-213ENST00000513352 SDC4P31431 198 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms