RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 TAF5LO75529 589 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 RPS6KA4O75676 772 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 RPP40O75818 363 aaKnown RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 KRT38O76015 456 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 GFPT2O94808 682 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 RTN3O95197 1032 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 SPATA31D3P0C874 917 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 HK1P19367 917 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 ITGALP20701 1170 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 RBL1P28749 1068 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 CASP6P55212 293 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 ELAVL1Q15717 326 aaKnown RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 CTXN3Q4LDR2 81 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 SLC45A4Q5BKX6 768 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 DGAT2L7PQ6IED9 249 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 TMEM108Q6UXF1 575 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 SLC30A10Q6XR72 485 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 Q6ZRM9 215 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 SPATA31D4Q6ZUB0 917 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 TMPRSS9Q7Z410 1059 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 RHOT2Q8IXI1 618 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 ANKRD52Q8NB46 1076 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 ZMIZ2Q8NF64 920 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 TDRD7Q8NHU6 1098 aaKnown RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 PPP2R3CQ969Q6 453 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 MARS2Q96GW9 593 aaKnown RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 LRIG1Q96JA1 1093 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 GPR87Q9BY21 358 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 NSMCE4AQ9NXX6 385 aa5.08□□□□□ -1.6
VPS13A-211ENST00000484581 NDRG4Q9ULP0 352 aaKnown RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-211ENST00000484581 COL15A1P39059 1388 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 A0A1W2PPH5 198 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 FSD2A1L4K1 749 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 PGPEP1LA6NFU8 196 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 FAM90A20PA6NIJ5 464 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 FOXN1O15353 648 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 USO1O60763 962 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 LARGE1O95461 756 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 HGFP14210 728 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 KCNA2P16389 499 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 PTGS2P35354 604 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 PGDP52209 483 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 ATXN1P54253 815 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SLC25A3Q00325 362 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 TIAL1Q01085 375 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 POU5F1Q01860 360 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 E2F2Q14209 437 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 PTCHD3Q3KNS1 767 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 GALNTL6Q49A17 601 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SLC9C2Q5TAH2 1124 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SFRP4Q6FHJ7 346 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SYT13Q7L8C5 426 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 TRABD2AQ86V40 505 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SLC15A3Q8IY34 581 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 NSUN7Q8NE18 718 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 HAS1Q92839 578 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 RSRC1Q96IZ7 334 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 PHACTR3Q96KR7 559 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 HIST1H2AAQ96QV6 131 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SMOC2Q9H3U7 446 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 SMYD2Q9NRG4 433 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 TMLHEQ9NVH6 421 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 VSX1Q9NZR4 365 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 HSFX1Q9UBD0 423 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 USP22Q9UPT9 525 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 DNAJC16Q9Y2G8 782 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 MRPS17Q9Y2R5 130 aaKnown RBP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 TTLL3Q9Y4R7 772 aa5.07□□□□□ -1.6
VPS13A-211ENST00000484581 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS13A-211ENST00000484581 XDHP47989 1333 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 SPATA31A3Q5VYP0 1347 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 VWA3AA6NCI4 1184 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 SAC3D1A6NKF1 404 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 TMCC2O75069 709 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 SUN1O94901 812 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 CSF1RP07333 972 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 CSF1P09603 554 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 CHMP24386 653 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 HTR7P34969 479 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 PSMC2P35998 433 aaKnown RBP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 ANXA11P50995 505 aaKnown RBP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 PDE6CP51160 858 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 RBM5P52756 815 aaKnown RBP eCLIP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 SF3A3Q12874 501 aaKnown RBP eCLIP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 CCNIQ14094 377 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 KRT32Q14532 448 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 CLCA4Q14CN2 919 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 BAK1Q16611 211 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 MEA1Q16626 185 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 TSTQ16762 297 aaKnown RBP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 FAM102AQ5T9C2 384 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 ARHGAP40Q5TG30 622 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 NAA35Q5VZE5 725 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 METRNLQ641Q3 311 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 ANO7Q6IWH7 933 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 RGS7BPQ6MZT1 257 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-211ENST00000484581 DPY19L2P1Q6NXN4 242 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 SYT12Q8IV01 421 aa5.06□□□□□ -1.6
VPS13A-211ENST00000484581 OR8H2Q8N162 312 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms