RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 ZSCAN12O43309 604 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TACC1O75410 805 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 OFD1O75665 1012 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 NDUFA10O95299 355 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TIMP1P01033 207 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 CLTBP09497 229 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 GZMAP12544 262 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ACO1P21399 889 aaKnown RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 AKAP5P24588 427 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 PIK3CAP42336 1068 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 AARSP49588 968 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS41-211ENST00000466017 GALK1P51570 392 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ZNF132P52740 706 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 MYL6P60660 151 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 OSTNP61366 133 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 NOP14P78316 857 aaKnown RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 KLHL30Q0D2K2 578 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 MYO1EQ12965 1108 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 GRIK3Q13003 919 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TCEAL1Q15170 157 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 NAB2Q15742 525 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ASIC2Q16515 512 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 SLC18A3Q16572 532 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 PTPN21Q16825 1174 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TRIM60Q495X7 471 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TIGD5Q53EQ6 642 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ZNF667Q5HYK9 610 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 C9orf57Q5W0N0 161 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 E4F1Q66K89 784 aaPredicted RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 OGFOD2Q6N063 350 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 CNKSR3Q6P9H4 555 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 RAD9BQ6WBX8 426 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ATG4DQ86TL0 474 aaPredicted RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 VPS36Q86VN1 386 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 UNC93AQ86WB7 457 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 ARHGEF19Q8IW93 802 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 RPUSD2Q8IZ73 545 aaKnown RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 UROC1Q96N76 676 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 MTMR12Q9C0I1 747 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 PRDM14Q9GZV8 571 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 HIPK3Q9H422 1215 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 NXF3Q9H4D5 531 aaKnown RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 NHEJ1Q9H9Q4 299 aaPredicted RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 RSAD1Q9HA92 442 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 SPTLC3Q9NUV7 552 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 MIOSQ9NXC5 875 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 NENFQ9UMX5 172 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 R3HCC1Q9Y3T6 440 aaKnown RBP5.84□□□□□ -1.47
VPS41-211ENST00000466017 NUB1Q9Y5A7 615 aa5.84□□□□□ -1.47
VPS41-211ENST00000466017 TRIP11Q15643 1979 aa5.84□□□□□ -1.48
VPS41-211ENST00000466017 RALGAPA2Q2PPJ7 1873 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 TTC3P53804 2025 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ARHGEF37A1IGU5 675 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ARL5CA6NH57 179 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 KIF2AO00139 706 aaPredicted RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 TNFRSF10CO14798 259 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 PQBP1O60828 265 aaKnown RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 ITGB3P05106 788 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 PAEPP09466 180 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 CCDC175P0C221 793 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 TNFAIP3P21580 790 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 MSNP26038 577 aaKnown RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 TAF6P49848 677 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 HK2P52789 917 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 DSC1Q08554 894 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 GOLGA8FQ08AF8 430 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 GOLGA8DPQ0D2H9 430 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 INCA1Q0VD86 236 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 RAPGEF1Q13905 1077 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 STILQ15468 1287 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ARHGAP44Q17R89 818 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 LRRC26Q2I0M4 334 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ZNF699Q32M78 642 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 SV2CQ496J9 727 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 LMBRD2Q68DH5 695 aaPredicted RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 MFSD5Q6N075 450 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 GJB7Q6PEY0 223 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 DCLRE1AQ6PJP8 1040 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 TRIM72Q6ZMU5 477 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ZNF571Q7Z3V5 609 aaPredicted RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 REXO1L1PQ8IX06 675 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 CCAR2Q8N163 923 aaKnown RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 CRYBG2Q8N1P7 616 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 PPM1KQ8N3J5 372 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 TMEM199Q8N511 208 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 DIS3LQ8TF46 1054 aaKnown RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 LINC01599Q8WXQ3 324 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 DDX1Q92499 740 aaKnown RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 FAM168AQ92567 244 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 LIN37Q96GY3 246 aaPredicted RBP5.83□□□□□ -1.48
VPS41-211ENST00000466017 HPDLQ96IR7 371 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 VCPIP1Q96JH7 1222 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ZNF560Q96MR9 790 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 RPS6KC1Q96S38 1066 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 GAD1Q99259 594 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 AGPAT1Q99943 283 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 TMEM175Q9BSA9 504 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 PI4K2AQ9BTU6 479 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 ZNF518BQ9C0D4 1074 aa5.83□□□□□ -1.48
VPS41-211ENST00000466017 DNAI2Q9GZS0 605 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms