RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PDCL3Q9H2J4 239 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 EBF3Q9H4W6 596 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 LTB4R2Q9NPC1 389 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 GKN1Q9NS71 199 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 GTSE1Q9NYZ3 720 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 CFAP97Q9P2B7 532 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 STRIP2Q9ULQ0 834 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 PCDHGC3Q9UN70 934 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 E2F8A0AVK6 867 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 LRRC10BA6NIK2 292 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 SPECC1L-ADORA2AF8WAN1 911 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 TULP2O00295 520 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 SERPINC1P01008 464 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 AVPR2P30518 371 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 CTHP32929 405 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 RGS7P49802 495 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 DAOAP59103 153 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 POLR2FP61218 127 aaKnown RBP13.63□□□□□ -0.23
CLK3-224ENST00000568605 PM20D1Q6GTS8 502 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 MSANTD4Q8NCY6 345 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 IPO4Q8TEX9 1081 aaKnown RBP13.63□□□□□ -0.23
CLK3-224ENST00000568605 RNF139Q8WU17 664 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 FAM3CQ92520 227 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 LRRC3BQ96PB8 259 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 ZSWIM1Q9BR11 485 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 NAA15Q9BXJ9 866 aaKnown RBP13.63□□□□□ -0.23
CLK3-224ENST00000568605 GANQ9H2C0 597 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 NMUR1Q9HB89 426 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 ABCC13Q9NSE7 274 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 RASAL2Q9UJF2 1139 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 AJAP1Q9UKB5 411 aaPredicted RBP13.63□□□□□ -0.23
CLK3-224ENST00000568605 SIK3Q9Y2K2 1263 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 SIT1Q9Y3P8 196 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 WNT6Q9Y6F9 365 aa13.63□□□□□ -0.23
CLK3-224ENST00000568605 NYNRINQ9P2P1 1898 aaKnown RBP13.63□□□□□ -0.23
CLK3-224ENST00000568605 FOXN3O00409 490 aaPredicted RBP13.62□□□□□ -0.23
CLK3-224ENST00000568605 ADH1CP00326 375 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 CALCAP01258 141 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 IRF1P10914 325 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 GPD2P43304 727 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 VCPP55072 806 aaKnown RBP13.62□□□□□ -0.23
CLK3-224ENST00000568605 COG7P83436 770 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 TNK2Q07912 1038 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 PDCLQ13371 301 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 LRRC32Q14392 662 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 IQCB1Q15051 598 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 NFKBIBQ15653 356 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 EML3Q32P44 896 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 TRIM68Q6AZZ1 485 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 PMF1Q6P1K2 205 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 CACNA2D4Q7Z3S7 1137 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 SLC47A2Q86VL8 602 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 ZNF677Q86XU0 584 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 ZFRQ96KR1 1074 aaKnown RBP13.62□□□□□ -0.23
CLK3-224ENST00000568605 IER2Q9BTL4 223 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 FOXQ1Q9C009 403 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 LHX5Q9H2C1 402 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 CBX8Q9HC52 389 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 HPS4Q9NQG7 708 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 NDRG2Q9UN36 371 aaKnown RBP13.62□□□□□ -0.23
CLK3-224ENST00000568605 MUC6Q6W4X9 2439 aa13.62□□□□□ -0.23
CLK3-224ENST00000568605 MYO18AQ92614 2054 aaKnown RBP13.61□□□□□ -0.23
CLK3-224ENST00000568605 LTFP02788 710 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 TPM3P06753 285 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 CCDC172P0C7W6 258 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 PNMA6AP0CW24 399 aaPredicted RBP13.61□□□□□ -0.23
CLK3-224ENST00000568605 CYP11B1P15538 503 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 COL9A1P20849 921 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 CLCN1P35523 988 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 SOX5P35711 763 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 STAT1P42224 750 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 EFEMP1Q12805 493 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 DPY19L2P1Q6NXN4 242 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 DENND1BQ6P3S1 775 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 APTXQ7Z2E3 356 aaKnown RBP13.61□□□□□ -0.23
CLK3-224ENST00000568605 SCD5Q86SK9 330 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 LUZP1Q86V48 1076 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 MIB1Q86YT6 1006 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 CCDC105Q8IYK2 499 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 TMEM105Q8N8V8 129 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 TMEM35BQ8NCS4 154 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 RIN3Q8TB24 985 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 FAM149B1Q96BN6 582 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 DCLK3Q9C098 648 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 MIS12Q9H081 205 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 SYNCQ9H7C4 482 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 ECT2Q9H8V3 914 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 ACP6Q9NPH0 428 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 NLRC4Q9NPP4 1024 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 OSER1Q9NX31 292 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 MARCH2Q9P0N8 246 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 ZNF510Q9Y2H8 683 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 CACNA1IQ9P0X4 2223 aa13.61□□□□□ -0.23
CLK3-224ENST00000568605 A0A1B0GTH6 734 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 A0A1W2PQC6 194 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 FAM170BA6NMN3 283 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 YJEFN3A6XGL0 299 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 E5RJQ4 531 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 E7ENQ6 273 aa13.6□□□□□ -0.23
CLK3-224ENST00000568605 PIK3R2O00459 728 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms