RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 OC90Q02509 493 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 TUSC3Q13454 348 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 SLC39A14Q15043 492 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 COBLL1Q53SF7 1204 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 KSR1Q8IVT5 923 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 HCAR2Q8TDS4 363 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 NAF1Q96HR8 494 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 RSPH9Q9H1X1 276 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 SLC31A1O15431 190 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 POLBP06746 335 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 RAP1GAPP47736 663 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 SARSP49591 514 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 PSEN1P49768 467 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 PDK1Q15118 436 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TBC1D1Q86TI0 1168 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 ZC3H18Q86VM9 953 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 GRAMD1CQ8IYS0 662 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TTC29Q8NA56 475 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 GPR152Q8TDT2 470 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 AUTS2Q8WXX7 1259 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 INTS7Q9NVH2 962 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 REREQ9P2R6 1566 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TRIM16O95361 564 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 MAGEA10P43363 369 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 FGL2Q14314 439 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 PDIA5Q14554 519 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 RNF43Q68DV7 783 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 P4HA3Q7Z4N8 544 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 ERVK-11Q9UQG0 969 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 LMTK2Q8IWU2 1503 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 PMPCBO75439 489 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TROVE2P10155 538 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 DGKGP49619 791 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 MTX1Q13505 466 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 BTN2A2Q8WVV5 523 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 CAPSLQ8WWF8 208 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 JSRP1Q96MG2 331 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 HEMGNQ9BXL5 484 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 WWOXQ9NZC7 414 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 KIAA1257Q9ULG3 409 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TRDMT1O14717 391 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 BST2Q10589 180 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 CDC16Q13042 620 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 ANKRD20A8PQ5CZ79 823 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 GPAT2Q6NUI2 795 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 MGARPQ8TDB4 240 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 FTSJ1Q9UET6 329 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 DNAJC16Q9Y2G8 782 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 SLIT1O75093 1534 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TRBV23OR9-2A0A075B6M9 112 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 ISM1B1AKI9 464 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 FFAR2O15552 330 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 KLK3P07288 261 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 ALDH4A1P30038 563 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 DPP6P42658 865 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 CTSOP43234 321 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 SNRPFP62306 86 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 CAP1Q01518 475 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 IRGCQ6NXR0 463 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 RPAINQ86UA6 219 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 NUP93Q8N1F7 819 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 TRIM58Q8NG06 486 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 RTP3Q9BQQ7 232 aa9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 APOBEC2Q9Y235 224 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-202ENST00000381753 PVALEFA0A1B0GWK0 134 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 TPD52L2O43399 206 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 EOMESO95936 686 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 VDRP11473 427 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 GTF2H1P32780 548 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 DHX9Q08211 1270 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 DDX39BQ13838 428 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 PDGFRLQ15198 375 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 GRASPQ7Z6J2 395 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 LIX1Q8N485 282 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 SCAIQ8N9R8 606 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 SPPL2BQ8TCT7 592 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 MAGEC3Q8TD91 643 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 OXER1Q8TDS5 423 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 FBXL18Q96ME1 805 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 FERD3LQ96RJ6 166 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 BTBD1Q9H0C5 482 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 KIAA1522Q9P206 1035 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 STX18Q9P2W9 335 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 NUDT5Q9UKK9 219 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 PCDHA7Q9UN72 937 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 HES2Q9Y543 173 aa9.52□□□□□ -0.88
LIMCH1-202ENST00000381753 PCNAP12004 261 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 PSMA3P25788 255 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 DBN1Q16643 649 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 SDHAF4Q5VUM1 108 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 RHOT2Q8IXI1 618 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 CERS5Q8N5B7 392 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM98AQ8NCA5 519 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 STK36Q9NRP7 1315 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 ZSCAN9O15535 394 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 HOXB2P14652 356 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 EHHADHQ08426 723 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 MPPE1Q53F39 396 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 ARMC12Q5T9G4 340 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms