RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 TRIM15Q9C019 465 aa16.6■□□□□ 0.25
NPHP3-201ENST00000337331 SMARCAD1Q9H4L7 1026 aa16.6■□□□□ 0.25
NPHP3-201ENST00000337331 BLOC1S4Q9NUP1 217 aa16.6■□□□□ 0.25
NPHP3-201ENST00000337331 UBA6A0AVT1 1052 aaPredicted RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 CCNG1P51959 295 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 PERM1Q5SV97 790 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 POTEAQ6S8J7 498 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 ALG3Q92685 438 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 CCDC90BQ9GZT6 254 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 LRRC4CQ9HCJ2 640 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 E2F8A0AVK6 867 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 DDTLA6NHG4 134 aaPredicted RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 ASB14A6NK59 587 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 CCDC130P13994 396 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 ALDH1A3P47895 512 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 NPTX2P47972 431 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 AQP4P55087 323 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 RGS21Q2M5E4 152 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 CCDC153Q494R4 210 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 TSPAN14Q8NG11 270 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 NOL6Q9H6R4 1146 aaKnown RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 C17orf75Q9HAS0 396 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 AP4S1Q9Y587 144 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 C19orf81C9J6K1 198 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 ZNF24P17028 368 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 MROH9Q5TGP6 573 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 KLHDC10Q6PID8 442 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 DACT3Q96B18 629 aaPredicted RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 TMA16Q96EY4 203 aaKnown RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 SH3GL1Q99961 368 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 TMEM79Q9BSE2 394 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 MRPL40Q9NQ50 206 aaKnown RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 TRIM49D1C9J1S8 452 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 AP3B1O00203 1094 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 DFFAO00273 331 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 CACNB2Q08289 660 aaPredicted RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 NRF1Q16656 503 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 KCNT1Q5JUK3 1230 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 FRA10AC1Q70Z53 315 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 KCNK18Q7Z418 384 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 PPIL6Q8IXY8 311 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 RBM15BQ8NDT2 890 aaKnown RBP16.59■□□□□ 0.25
NPHP3-201ENST00000337331 JADE3Q92613 823 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 HES6Q96HZ4 224 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 RABGEF1Q9UJ41 708 aa16.59■□□□□ 0.25
NPHP3-201ENST00000337331 WTIPA6NIX2 430 aaPredicted RBP16.58■□□□□ 0.25
NPHP3-201ENST00000337331 C3orf70A6NLC5 250 aaPredicted RBP16.58■□□□□ 0.25
NPHP3-201ENST00000337331 SPAG6O75602 509 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 PEX2P28328 305 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 NADK2Q4G0N4 442 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 BTBD8Q5XKL5 378 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 EGFLAMQ63HQ2 1017 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 RNF19BQ6ZMZ0 732 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 ASRGL1Q7L266 308 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 ALYREFQ86V81 257 aaKnown RBP16.58■□□□□ 0.25
NPHP3-201ENST00000337331 HPS1Q92902 700 aa16.58■□□□□ 0.25
NPHP3-201ENST00000337331 DEAF1O75398 565 aaPredicted RBP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SERPINB9P50453 376 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 NR1D2Q14995 579 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 ZBTB41Q5SVQ8 909 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SV2AQ7L0J3 742 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 ULK4Q96C45 1275 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 COPS7BQ9H9Q2 264 aaPredicted RBP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SP110Q9HB58 689 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 TELO2Q9Y4R8 837 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SPATA31A5Q5VU36 1347 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SPATA31A7Q8IWB4 1347 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 CFAP99D6REC4 459 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 ICAM1P05362 532 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 TAL1P17542 331 aaPredicted RBP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 HOXD12P35452 270 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SULT1E1P49888 294 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 VCPP55072 806 aaKnown RBP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 EN1Q05925 392 aaPredicted RBP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 TRAF2Q12933 501 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 MAPK11Q15759 364 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 KYAT1Q16773 422 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 TEDDM1Q5T9Z0 273 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 ANGPTL8Q6UXH0 198 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SLC47A2Q86VL8 602 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 USP33Q8TEY7 942 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 CYGBQ8WWM9 190 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 SLC35C1Q96A29 364 aa16.58■□□□□ 0.24
NPHP3-201ENST00000337331 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.58■□□□□ 0.24
NPHP3-201ENST00000337331 PLOD1Q02809 727 aaPredicted RBP16.57■□□□□ 0.24
NPHP3-201ENST00000337331 COBLL1Q53SF7 1204 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 MRPS26Q9BYN8 205 aaKnown RBP16.57■□□□□ 0.24
NPHP3-201ENST00000337331 NMUR2Q9GZQ4 415 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 DEFB129Q9H1M3 183 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 ELP3Q9H9T3 547 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 LIN28AQ9H9Z2 209 aaKnown RBP16.57■□□□□ 0.24
NPHP3-201ENST00000337331 CHST7Q9NS84 486 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 CARD8Q9Y2G2 431 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 AP4B1Q9Y6B7 739 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 GTPBP10A4D1E9 387 aaKnown RBP16.57■□□□□ 0.24
NPHP3-201ENST00000337331 GOLGA8TH3BQL2 631 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 NUDT2P50583 147 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 SLC1A5Q15758 541 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 IER5Q5VY09 327 aa16.57■□□□□ 0.24
NPHP3-201ENST00000337331 PACS1Q6VY07 963 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms