RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 ARHGAP18Q8N392 663 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 WDTC1Q8N5D0 677 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 NUP58Q9BVL2 599 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 SLC4A5Q9BY07 1137 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 EDEM3Q9BZQ6 932 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 RNF38Q9H0F5 515 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 SMOC2Q9H3U7 446 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 CCSER2Q9H7U1 834 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 OSER1Q9NX31 292 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 CLIC5Q9NZA1 410 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 NOCTQ9UK39 431 aaKnown RBP21.34■■□□□ 1.01
PTCD3-220ENST00000627371 ARHGAP26Q9UNA1 814 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 CCL26Q9Y258 94 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 CEP83Q9Y592 693 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 COL4A2P08572 1712 aa21.34■■□□□ 1.01
PTCD3-220ENST00000627371 PI4K2BG5E9Z4 385 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 COCHO43405 550 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 NARSO43776 548 aaKnown RBP21.33■■□□□ 1.01
PTCD3-220ENST00000627371 TLR5O60602 858 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 FBXO21O94952 628 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 SRFP11831 508 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 CDH5P33151 784 aaPredicted RBP21.33■■□□□ 1.01
PTCD3-220ENST00000627371 DAOAP59103 153 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 ZXDAP98168 799 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 PDCLQ13371 301 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 TAF3Q5VWG9 929 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 C1orf131Q8NDD1 294 aaKnown RBP21.33■■□□□ 1.01
PTCD3-220ENST00000627371 ANP32EQ9BTT0 268 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 RBSNQ9H1K0 784 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 PDCL3Q9H2J4 239 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 ST7Q9NRC1 585 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.33■■□□□ 1.01
PTCD3-220ENST00000627371 NAGPAQ9UK23 515 aa21.33■■□□□ 1.01
PTCD3-220ENST00000627371 ITIH6Q6UXX5 1313 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 TECTAO75443 2155 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 PIK3R2O00459 728 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 DLL1O00548 723 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 RARGP13631 454 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 TCF3P15923 654 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 FERP16591 822 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 YWHAGP61981 247 aaKnown RBP eCLIP21.32■■□□□ 1
PTCD3-220ENST00000627371 CDR2Q01850 454 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 FCHO2Q0JRZ9 810 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 USP4Q13107 963 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 GRM2Q14416 872 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 TMEM110Q86TL2 294 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 GAS2L3Q86XJ1 694 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 ZNF276Q8N554 614 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 BPIFB1Q8TDL5 484 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 SLC20A1Q8WUM9 679 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 IRGQQ8WZA9 623 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 EDAQ92838 391 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 IQCDQ96DY2 449 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 LRRC3BQ96PB8 259 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 NOX5Q96PH1 765 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 TRMT61BQ9BVS5 477 aaKnown RBP21.32■■□□□ 1
PTCD3-220ENST00000627371 SLC2A4RGQ9NR83 387 aa21.32■■□□□ 1
PTCD3-220ENST00000627371 A0A1W2PQJ5 194 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 LRRC53A6NM62 1247 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 E5RJQ4 531 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 LSM8O95777 96 aaKnown RBP21.31■■□□□ 1
PTCD3-220ENST00000627371 MMEP08473 750 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 CCDC172P0C7W6 258 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 MBL2P11226 248 aaPredicted RBP21.31■■□□□ 1
PTCD3-220ENST00000627371 RALAP11233 206 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 ZNF77Q15935 545 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 KLHDC10Q6PID8 442 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 SARM1Q6SZW1 724 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 TADA2BQ86TJ2 420 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 TMEM35BQ8NCS4 154 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 RIN3Q8TB24 985 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 NDRG1Q92597 394 aaKnown RBP21.31■■□□□ 1
PTCD3-220ENST00000627371 CPXM1Q96SM3 734 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 CDK5RAP1Q96SZ6 601 aaKnown RBP21.31■■□□□ 1
PTCD3-220ENST00000627371 NACA2Q9H009 215 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 CPQQ9Y646 472 aa21.31■■□□□ 1
PTCD3-220ENST00000627371 YJEFN3A6XGL0 299 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 E7ENQ6 273 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 ATP5C1P36542 298 aaKnown RBP21.3■■□□□ 1
PTCD3-220ENST00000627371 GPC5P78333 572 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 ZXDBP98169 803 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 FMO1Q01740 532 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 ARID5AQ03989 594 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 YAF2Q8IY57 180 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 SH3RF2Q8TEC5 729 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 CLEC4CQ8WTT0 213 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 PPP1R13BQ96KQ4 1090 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 MIS12Q9H081 205 aa21.3■■□□□ 1
PTCD3-220ENST00000627371 PAPSS1O43252 624 aaPredicted RBP21.29■■□□□ 1
PTCD3-220ENST00000627371 SART1O43290 800 aaKnown RBP21.29■■□□□ 1
PTCD3-220ENST00000627371 TBX18O95935 607 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 CHRNB2P17787 502 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 GDI1P31150 447 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 SIGLEC14Q08ET2 396 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 PTPN20Q4JDL3 420 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 ARHGAP29Q52LW3 1261 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 IRF2BP2Q7Z5L9 587 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 DDX42Q86XP3 938 aaKnown RBP eCLIP21.29■■□□□ 1
PTCD3-220ENST00000627371 SCUBE3Q8IX30 993 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 ZFRQ96KR1 1074 aaKnown RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms