RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ROR1Q01973 937 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 MXD4Q14582 209 aaPredicted RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 SEZ6Q53EL9 994 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 EAPPQ56P03 285 aaPredicted RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 TFDP3Q5H9I0 405 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 CORO6Q6QEF8 472 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 NUDCD1Q96RS6 583 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 HNRNPABQ99729 332 aaKnown RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 DEFB129Q9H1M3 183 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 VPS33BQ9H267 617 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 NINJ2Q9NZG7 142 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 SLC12A6Q9UHW9 1150 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 BCAR1P56945 870 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 EXOC3L1Q86VI1 746 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 ZFAND2BQ8WV99 257 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 ZNF606Q8WXB4 792 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 GLIS2Q9BZE0 524 aaPredicted RBP10.82□□□□□ -0.68
LIG1-220ENST00000601091 MTFR1LQ9H019 292 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 STOML1Q9UBI4 398 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 PHTF1Q9UMS5 762 aa10.82□□□□□ -0.68
LIG1-220ENST00000601091 ROBO1Q9Y6N7 1651 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SKIP12755 728 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 MORF4L2Q15014 288 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 LVRNQ6Q4G3 990 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PPIL6Q8IXY8 311 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SLC38A10Q9HBR0 1119 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 RXFP1Q9HBX9 757 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 ALG13Q9NP73 1137 aaKnown RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 NPHS2Q9NP85 383 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 EMC3Q9P0I2 261 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 DOT1LQ8TEK3 1739 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 RTCAO00442 366 aaKnown RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 SUPT20HL2P0C7V6 817 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 KRT4P19013 534 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 WEE1P30291 646 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 DSTNP60981 165 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PPP2R5DQ14738 602 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SMTNL2Q2TAL5 461 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PLEKHG6Q3KR16 790 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 CRLF3Q8IUI8 442 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SEMA4DQ92854 862 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 FAM149B1Q96BN6 582 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 ACSF2Q96CM8 615 aaPredicted RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 GBP5Q96PP8 586 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 CGRRF1Q99675 332 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PPARGC1AQ9UBK2 798 aaKnown RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 ACAD8Q9UKU7 415 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 HNRNPCL1O60812 293 aaKnown RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 ATP9AO75110 1047 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 ARL4AP40617 200 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 HSD17B4P51659 736 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 NCKAP1LP55160 1127 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 TNFAIP2Q03169 654 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 MSLNQ13421 630 aaPredicted RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 MTM1Q13496 603 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 CAMK2BQ13554 666 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PPP2R2DQ66LE6 453 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 FAM228AQ86W67 206 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SIAH1Q8IUQ4 282 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SLC44A2Q8IWA5 706 aaPredicted RBP10.81□□□□□ -0.68
LIG1-220ENST00000601091 SULF1Q8IWU6 871 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 SPERTQ8NA61 448 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 TLCD1Q96CP7 247 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 PPP1R16BQ96T49 567 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 ZNF518BQ9C0D4 1074 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 ITGB4P16144 1822 aa10.81□□□□□ -0.68
LIG1-220ENST00000601091 CACNA1SQ13698 1873 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ATP6V1G2O95670 118 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 TKTP29401 623 aaKnown RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 HOXC13P31276 330 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 SDC4P31431 198 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 EVI2BP34910 448 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ETV3P41162 512 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 RAD23BP54727 409 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 TPD52P55327 224 aaPredicted RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 BACE1P56817 501 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 UBAP2Q5T6F2 1119 aaKnown RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 CYP4A22Q5TCH4 519 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 PDZD4Q76G19 769 aaPredicted RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.8□□□□□ -0.68
LIG1-220ENST00000601091 SPATA18Q8TC71 538 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 TMEM121Q9BTD3 319 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ASTN2O75129 1339 aaPredicted RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 TCRBV7S2A1N4TA0A589 114 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 TOM1L1O75674 476 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 RASSF9O75901 435 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 CALCAP01258 141 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 PHKA2P46019 1235 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 IER5Q5VY09 327 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 TTC27Q6P3X3 843 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 SPOCD1Q6ZMY3 1216 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 VSIG10LQ86VR7 867 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 MICALL2Q8IY33 904 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 CKAP2Q8WWK9 683 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ZBED2Q9BTP6 218 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ST6GALNAC4Q9H4F1 302 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 USP20Q9Y2K6 914 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 IRS2Q9Y4H2 1338 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 CCDC88AQ3V6T2 1871 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 KLRG2A4D1S0 409 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms