RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 USP3Q9Y6I4 520 aa15.72■□□□□ 0.11
NUP54-213ENST00000513352 PRUNE2Q8WUY3 3088 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 SSU72P8A0A1W2PR75 194 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 NRG2O14511 850 aaPredicted RBP15.71■□□□□ 0.11
NUP54-213ENST00000513352 SART1O43290 800 aaKnown RBP15.71■□□□□ 0.11
NUP54-213ENST00000513352 PPP3CCP48454 512 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 KCNQ1P51787 676 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 DAOAP59103 153 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 STXBP5Q5T5C0 1151 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 BTBD8Q5XKL5 378 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 PPP1R2P3Q6NXS1 205 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 FAM183BPQ6ZVS7 135 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 RSRC2Q7L4I2 434 aaKnown RBP15.71■□□□□ 0.11
NUP54-213ENST00000513352 TMEM150AQ86TG1 271 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 TMEM110Q86TL2 294 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 MON1AQ86VX9 555 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 DNAAF5Q86Y56 855 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 MAB21L3Q8N8X9 362 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 MCRS1Q96EZ8 462 aa15.71■□□□□ 0.11
NUP54-213ENST00000513352 A0A087X0T9 212 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 FAM92AA1XBS5 289 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 C2orf78A6NCI8 922 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 ZNF840PA6NDX5 716 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 PAPSS1O43252 624 aaPredicted RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 RTN2O75298 545 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 MOSPD3O75425 235 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 LTFP02788 710 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 CALB1P05937 261 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 FAM228BP0C875 321 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 RALAP11233 206 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 IL9P15248 144 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 MMP8P22894 467 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 RPL34P49207 117 aaKnown RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 MRPS5P82675 430 aaKnown RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 GFPT1Q06210 699 aaPredicted RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 CCDC122Q5T0U0 273 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 FAM102AQ5T9C2 384 aaPredicted RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 TXNDC8Q6A555 127 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 PM20D1Q6GTS8 502 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 TOGARAM2Q6ZUX3 1019 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 NPAS3Q8IXF0 933 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 TTC16Q8NEE8 873 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 OLIG1Q8TAK6 271 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 IRGQQ8WZA9 623 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 FGF13Q92913 245 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 BAG1Q99933 345 aaPredicted RBP15.7■□□□□ 0.1
NUP54-213ENST00000513352 NMUR1Q9HB89 426 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 SPTLC3Q9NUV7 552 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 CDH7Q9ULB5 785 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 STRIP2Q9ULQ0 834 aa15.7■□□□□ 0.1
NUP54-213ENST00000513352 DOCK8Q8NF50 2099 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 TRAV19A0A0A6YYK7 116 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 YJEFN3A6XGL0 299 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 E7ENQ6 273 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 GRAP2O75791 330 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 FTLP02792 175 aaPredicted RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 CKMP06732 381 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 RARGP13631 454 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 CYLC1P35663 651 aaPredicted RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 GABRB2P47870 512 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 PGFP49763 221 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 PSEN1P49768 467 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 RNASE9P60153 205 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 CDK17Q00537 523 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 C1QBPQ07021 282 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 SMAD2Q15796 467 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 C10orf120Q5SQS8 335 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 HECTD3Q5T447 861 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 ALKBH5Q6P6C2 394 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 HFE2Q6ZVN8 426 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 MON1BQ7L1V2 547 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 OTOP3Q7RTS5 596 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 SCD5Q86SK9 330 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 XYLT1Q86Y38 959 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 PHF13Q86YI8 300 aaPredicted RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 MCOLN2Q8IZK6 566 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 SCML4Q8N228 414 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 TDRD5Q8NAT2 981 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 RNF139Q8WU17 664 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 EDEM1Q92611 657 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 ZNF653Q96CK0 615 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 ACSF2Q96CM8 615 aaPredicted RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 PIWIL1Q96J94 861 aaKnown RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 RPGRIP1Q96KN7 1286 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 MYADMQ96S97 322 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 PHF7Q9BWX1 381 aaPredicted RBP15.69■□□□□ 0.1
NUP54-213ENST00000513352 TASP1Q9H6P5 420 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 CCSER2Q9H7U1 834 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.69■□□□□ 0.1
NUP54-213ENST00000513352 NUDT5Q9UKK9 219 aa15.69■□□□□ 0.1
NUP54-213ENST00000513352 NCANO14594 1321 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 SOWAHDA6NJG2 315 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 CAPN9O14815 690 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 ATMINO43313 823 aaPredicted RBP15.68■□□□□ 0.1
NUP54-213ENST00000513352 TLR5O60602 858 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 MBL2P11226 248 aaPredicted RBP15.68■□□□□ 0.1
NUP54-213ENST00000513352 GZMAP12544 262 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 ABCB4P21439 1286 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 DDX6P26196 483 aaKnown RBP eCLIP15.68■□□□□ 0.1
NUP54-213ENST00000513352 AVPR1AP37288 418 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms