RNA–Protein interactions for RNA: ENST00000639695.1

RFC1-217, Transcript of replication factor C subunit 1, humanhuman

TSL 5 BASIC

Gene RFC1, Length 867 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-217ENST00000639695 CD2BP2O95400 341 aaKnown RBP12.74□□□□□ -0.37
RFC1-217ENST00000639695 MSS51Q4VC12 460 aa12.74□□□□□ -0.37
RFC1-217ENST00000639695 TIMELESSQ9UNS1 1208 aa12.74□□□□□ -0.37
RFC1-217ENST00000639695 CD46P15529 392 aa12.73□□□□□ -0.37
RFC1-217ENST00000639695 HLA-CQ95604 372 aa12.73□□□□□ -0.37
RFC1-217ENST00000639695 AVPP01185 164 aa12.71□□□□□ -0.37
RFC1-217ENST00000639695 CRIPAKQ8N1N5 446 aa12.71□□□□□ -0.37
RFC1-217ENST00000639695 CYP4X1Q8N118 509 aa12.7□□□□□ -0.38
RFC1-217ENST00000639695 MAP2K5Q13163 448 aa12.68□□□□□ -0.38
RFC1-217ENST00000639695 LCE2AQ5TA79 106 aaPredicted RBP12.68□□□□□ -0.38
RFC1-217ENST00000639695 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.68□□□□□ -0.38
RFC1-217ENST00000639695 MMP16P51512 607 aa12.67□□□□□ -0.38
RFC1-217ENST00000639695 MDM2Q00987 491 aaPredicted RBP12.66□□□□□ -0.38
RFC1-217ENST00000639695 GMPR2Q9P2T1 348 aaKnown RBP12.66□□□□□ -0.38
RFC1-217ENST00000639695 IRF6O14896 467 aa12.65□□□□□ -0.38
RFC1-217ENST00000639695 TRIM32Q13049 653 aa12.65□□□□□ -0.38
RFC1-217ENST00000639695 GRIPAP1Q4V328 841 aa12.65□□□□□ -0.38
RFC1-217ENST00000639695 AXIN1O15169 862 aa12.64□□□□□ -0.39
RFC1-217ENST00000639695 ZBTB24O43167 697 aaPredicted RBP12.64□□□□□ -0.39
RFC1-217ENST00000639695 KDM4AO75164 1064 aa12.64□□□□□ -0.39
RFC1-217ENST00000639695 SMPD1P17405 629 aa12.64□□□□□ -0.39
RFC1-217ENST00000639695 Q3C1V9 767 aa12.64□□□□□ -0.39
RFC1-217ENST00000639695 WNT7AO00755 349 aa12.63□□□□□ -0.39
RFC1-217ENST00000639695 DXOO77932 396 aaKnown RBP12.63□□□□□ -0.39
RFC1-217ENST00000639695 GUCA2AQ02747 115 aa12.63□□□□□ -0.39
RFC1-217ENST00000639695 TREML4Q6UXN2 200 aa12.63□□□□□ -0.39
RFC1-217ENST00000639695 TTC24A2A3L6 582 aaPredicted RBP12.62□□□□□ -0.39
RFC1-217ENST00000639695 USB1Q9BQ65 265 aaKnown RBP12.62□□□□□ -0.39
RFC1-217ENST00000639695 MRGPRX2Q96LB1 330 aa12.61□□□□□ -0.39
RFC1-217ENST00000639695 J3QL48 77 aa12.6□□□□□ -0.39
RFC1-217ENST00000639695 SMCPP49901 116 aaPredicted RBP12.6□□□□□ -0.39
RFC1-217ENST00000639695 HOXA2O43364 376 aa12.59□□□□□ -0.39
RFC1-217ENST00000639695 CCDC102AQ96A19 550 aa12.59□□□□□ -0.39
RFC1-217ENST00000639695 CTC1Q2NKJ3 1217 aa12.58□□□□□ -0.4
RFC1-217ENST00000639695 SNIP1Q8TAD8 396 aaKnown RBP12.58□□□□□ -0.4
RFC1-217ENST00000639695 SYMPKQ92797 1274 aaKnown RBP12.58□□□□□ -0.4
RFC1-217ENST00000639695 C11orf95C9JLR9 678 aaPredicted RBP12.57□□□□□ -0.4
RFC1-217ENST00000639695 SKOR1P84550 965 aa12.57□□□□□ -0.4
RFC1-217ENST00000639695 MINK1Q8N4C8 1332 aaPredicted RBP12.57□□□□□ -0.4
RFC1-217ENST00000639695 CCDC24Q8N4L8 307 aa12.56□□□□□ -0.4
RFC1-217ENST00000639695 USP46P62068 366 aa12.54□□□□□ -0.4
RFC1-217ENST00000639695 HPS1Q92902 700 aa12.53□□□□□ -0.4
RFC1-217ENST00000639695 FAM217BQ9NTX9 383 aaPredicted RBP12.53□□□□□ -0.4
RFC1-217ENST00000639695 REPIN1Q9BWE0 567 aaKnown RBP12.52□□□□□ -0.41
RFC1-217ENST00000639695 ATP13A2Q9NQ11 1180 aa12.52□□□□□ -0.41
RFC1-217ENST00000639695 SNRPBP14678 240 aaKnown RBP12.51□□□□□ -0.41
RFC1-217ENST00000639695 RC3H1Q5TC82 1133 aaKnown RBP12.51□□□□□ -0.41
RFC1-217ENST00000639695 C14orf37Q86TY3 774 aa12.51□□□□□ -0.41
RFC1-217ENST00000639695 NFX1Q12986 1120 aaKnown RBP12.5□□□□□ -0.41
RFC1-217ENST00000639695 LCE2CQ5TA81 110 aa12.5□□□□□ -0.41
RFC1-217ENST00000639695 ARXQ96QS3 562 aa12.5□□□□□ -0.41
RFC1-217ENST00000639695 GPCPD1Q9NPB8 672 aa12.5□□□□□ -0.41
RFC1-217ENST00000639695 JUNDP17535 347 aa12.49□□□□□ -0.41
RFC1-217ENST00000639695 PTCRAQ6ISU1 281 aaPredicted RBP12.49□□□□□ -0.41
RFC1-217ENST00000639695 WFS1O76024 890 aa12.48□□□□□ -0.41
RFC1-217ENST00000639695 PCDHGC3Q9UN70 934 aa12.48□□□□□ -0.41
RFC1-217ENST00000639695 CLCN1P35523 988 aa12.46□□□□□ -0.41
RFC1-217ENST00000639695 ZC3H15Q8WU90 426 aaKnown RBP12.46□□□□□ -0.41
RFC1-217ENST00000639695 BRPF1P55201 1214 aaPredicted RBP12.45□□□□□ -0.42
RFC1-217ENST00000639695 WNT7BP56706 349 aa12.45□□□□□ -0.42
RFC1-217ENST00000639695 RETREG3Q86VR2 466 aa12.42□□□□□ -0.42
RFC1-217ENST00000639695 NUTM1Q86Y26 1132 aa12.42□□□□□ -0.42
RFC1-217ENST00000639695 TRIM47Q96LD4 638 aa12.42□□□□□ -0.42
RFC1-217ENST00000639695 ALDH1A1P00352 501 aa12.41□□□□□ -0.42
RFC1-217ENST00000639695 NEUROD2Q15784 382 aa12.41□□□□□ -0.42
RFC1-217ENST00000639695 NUDT12Q9BQG2 462 aa12.41□□□□□ -0.42
RFC1-217ENST00000639695 SIAH2O43255 324 aa12.4□□□□□ -0.42
RFC1-217ENST00000639695 FDX1P10109 184 aa12.4□□□□□ -0.42
RFC1-217ENST00000639695 NDUFV2P19404 249 aa12.38□□□□□ -0.43
RFC1-217ENST00000639695 SPIRE2Q8WWL2 714 aa12.38□□□□□ -0.43
RFC1-217ENST00000639695 C6orf229H3BNL8 230 aa12.37□□□□□ -0.43
RFC1-217ENST00000639695 SSTR3P32745 418 aaPredicted RBP12.37□□□□□ -0.43
RFC1-217ENST00000639695 TERTO14746 1132 aaKnown RBP12.35□□□□□ -0.43
RFC1-217ENST00000639695 SH3BP2P78314 561 aa12.35□□□□□ -0.43
RFC1-217ENST00000639695 KRI1Q8N9T8 703 aaKnown RBP12.35□□□□□ -0.43
RFC1-217ENST00000639695 SLC24A3Q9HC58 644 aa12.35□□□□□ -0.43
RFC1-217ENST00000639695 SENP2Q9HC62 589 aa12.35□□□□□ -0.43
RFC1-217ENST00000639695 MOXD2PA6NHM9 499 aa12.34□□□□□ -0.43
RFC1-217ENST00000639695 WIPF1O43516 503 aa12.34□□□□□ -0.43
RFC1-217ENST00000639695 MS4A1P11836 297 aa12.34□□□□□ -0.43
RFC1-217ENST00000639695 EHBP1Q8NDI1 1231 aa12.34□□□□□ -0.43
RFC1-217ENST00000639695 CCNYL3P0C7X3 344 aa12.33□□□□□ -0.44
RFC1-217ENST00000639695 BMP1P13497 986 aa12.33□□□□□ -0.44
RFC1-217ENST00000639695 TRIM46Q7Z4K8 759 aa12.33□□□□□ -0.44
RFC1-217ENST00000639695 LINC01559Q495D7 138 aa12.31□□□□□ -0.44
RFC1-217ENST00000639695 UNC93B1Q9H1C4 597 aa12.3□□□□□ -0.44
RFC1-217ENST00000639695 ZMYND10O75800 440 aa12.29□□□□□ -0.44
RFC1-217ENST00000639695 PTPRNQ16849 979 aa12.29□□□□□ -0.44
RFC1-217ENST00000639695 BARGINQ6ZT62 677 aa12.29□□□□□ -0.44
RFC1-217ENST00000639695 PRR7Q8TB68 274 aa12.29□□□□□ -0.44
RFC1-217ENST00000639695 KIFC2Q96AC6 838 aa12.29□□□□□ -0.44
RFC1-217ENST00000639695 TTLL12Q14166 644 aaPredicted RBP12.28□□□□□ -0.44
RFC1-217ENST00000639695 BAP1Q92560 729 aa12.28□□□□□ -0.44
RFC1-217ENST00000639695 EVA1BQ9NVM1 165 aa12.28□□□□□ -0.44
RFC1-217ENST00000639695 TLL2Q9Y6L7 1015 aa12.28□□□□□ -0.44
RFC1-217ENST00000639695 GIGYF2Q6Y7W6 1299 aaKnown RBP12.27□□□□□ -0.45
RFC1-217ENST00000639695 HOMEZQ8IX15 550 aa12.27□□□□□ -0.45
RFC1-217ENST00000639695 CAPN5O15484 640 aaPredicted RBP12.26□□□□□ -0.45
RFC1-217ENST00000639695 AMHR2Q16671 573 aa12.26□□□□□ -0.45
RFC1-217ENST00000639695 WASF2Q9Y6W5 498 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms