RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 NCOA3Q9Y6Q9 1424 aa24.53■■□□□ 1.52
CLN6-218ENST00000637223 KNDC1Q76NI1 1749 aa24.53■■□□□ 1.52
CLN6-218ENST00000637223 MSH6P52701 1360 aa24.53■■□□□ 1.52
CLN6-218ENST00000637223 PRAM1Q96QH2 718 aa24.52■■□□□ 1.52
CLN6-218ENST00000637223 SAFB2Q14151 953 aaKnown RBP eCLIP24.51■■□□□ 1.51
CLN6-218ENST00000637223 SIRT1Q96EB6 747 aa24.51■■□□□ 1.51
CLN6-218ENST00000637223 RALGAPBQ86X10 1494 aa24.51■■□□□ 1.51
CLN6-218ENST00000637223 DLC1Q96QB1 1528 aa24.51■■□□□ 1.51
CLN6-218ENST00000637223 POGKQ9P215 609 aa24.5■■□□□ 1.51
CLN6-218ENST00000637223 C19orf44Q9H6X5 657 aa24.49■■□□□ 1.51
CLN6-218ENST00000637223 ADGRL3Q9HAR2 1447 aa24.49■■□□□ 1.51
CLN6-218ENST00000637223 GPRASP1Q5JY77 1395 aa24.47■■□□□ 1.51
CLN6-218ENST00000637223 CARD11Q9BXL7 1154 aa24.47■■□□□ 1.51
CLN6-218ENST00000637223 JCADQ9P266 1359 aa24.45■■□□□ 1.5
CLN6-218ENST00000637223 ATF3P18847 181 aa24.45■■□□□ 1.5
CLN6-218ENST00000637223 UPF1Q92900 1129 aaKnown RBP eCLIP24.45■■□□□ 1.5
CLN6-218ENST00000637223 SLAIN2Q9P270 581 aa24.45■■□□□ 1.5
CLN6-218ENST00000637223 NALCNQ8IZF0 1738 aa24.44■■□□□ 1.5
CLN6-218ENST00000637223 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.42■■□□□ 1.5
CLN6-218ENST00000637223 CADPS2Q86UW7 1296 aa24.42■■□□□ 1.5
CLN6-218ENST00000637223 PHLPP1O60346 1717 aa24.41■■□□□ 1.5
CLN6-218ENST00000637223 ARHGEF28Q8N1W1 1705 aaKnown RBP24.41■■□□□ 1.5
CLN6-218ENST00000637223 DCCP43146 1447 aa24.41■■□□□ 1.5
CLN6-218ENST00000637223 MINK1Q8N4C8 1332 aaPredicted RBP24.4■■□□□ 1.5
CLN6-218ENST00000637223 HIRIP3Q9BW71 556 aaPredicted RBP24.4■■□□□ 1.5
CLN6-218ENST00000637223 CENPJQ9HC77 1338 aaPredicted RBP24.38■■□□□ 1.49
CLN6-218ENST00000637223 MEX3CQ5U5Q3 659 aaKnown RBP24.37■■□□□ 1.49
CLN6-218ENST00000637223 EIF3AQ14152 1382 aaKnown RBP24.37■■□□□ 1.49
CLN6-218ENST00000637223 ZNF772Q68DY9 489 aaPredicted RBP24.36■■□□□ 1.49
CLN6-218ENST00000637223 CDC42BPGQ6DT37 1551 aa24.35■■□□□ 1.49
CLN6-218ENST00000637223 MST1RQ04912 1400 aa24.35■■□□□ 1.49
CLN6-218ENST00000637223 NUTM2FA1L443 756 aa24.34■■□□□ 1.49
CLN6-218ENST00000637223 SPATA31A6Q5VVP1 1343 aa24.32■■□□□ 1.48
CLN6-218ENST00000637223 LRP6O75581 1613 aa24.32■■□□□ 1.48
CLN6-218ENST00000637223 ADGRB2O60241 1585 aa24.3■■□□□ 1.48
CLN6-218ENST00000637223 USP47Q96K76 1375 aa24.29■■□□□ 1.48
CLN6-218ENST00000637223 COL16A1Q07092 1604 aaPredicted RBP24.29■■□□□ 1.48
CLN6-218ENST00000637223 WASLO00401 505 aaPredicted RBP24.29■■□□□ 1.48
CLN6-218ENST00000637223 C1orf167Q5SNV9 1468 aa24.29■■□□□ 1.48
CLN6-218ENST00000637223 RXRBP28702 533 aa24.28■■□□□ 1.48
CLN6-218ENST00000637223 QRICH2Q9H0J4 1663 aa24.27■■□□□ 1.48
CLN6-218ENST00000637223 ST20-MTHFSA0A0A6YYL1 179 aa24.26■■□□□ 1.47
CLN6-218ENST00000637223 BRINP3Q76B58 766 aa24.26■■□□□ 1.47
CLN6-218ENST00000637223 CDK19Q9BWU1 502 aa24.26■■□□□ 1.47
CLN6-218ENST00000637223 FMN2Q9NZ56 1722 aa24.25■■□□□ 1.47
CLN6-218ENST00000637223 ORAI2Q96SN7 254 aa24.25■■□□□ 1.47
CLN6-218ENST00000637223 ESCO1Q5FWF5 840 aa24.23■■□□□ 1.47
CLN6-218ENST00000637223 PRR36Q9H6K5 1346 aa24.22■■□□□ 1.47
CLN6-218ENST00000637223 TULP4Q9NRJ4 1543 aa24.21■■□□□ 1.47
CLN6-218ENST00000637223 NUTM2BA6NNL0 878 aaPredicted RBP24.21■■□□□ 1.47
CLN6-218ENST00000637223 NUTM2EB1AL46 878 aaPredicted RBP24.21■■□□□ 1.47
CLN6-218ENST00000637223 SRPK2P78362 688 aaKnown RBP24.21■■□□□ 1.47
CLN6-218ENST00000637223 NUTM2AQ8IVF1 878 aaPredicted RBP24.21■■□□□ 1.47
CLN6-218ENST00000637223 ANKARQ7Z5J8 1434 aa24.2■■□□□ 1.46
CLN6-218ENST00000637223 SBNO2Q9Y2G9 1366 aa24.2■■□□□ 1.46
CLN6-218ENST00000637223 EVC2Q86UK5 1308 aa24.2■■□□□ 1.46
CLN6-218ENST00000637223 CABP2Q9NPB3 220 aa24.2■■□□□ 1.46
CLN6-218ENST00000637223 TESK2Q96S53 571 aa24.19■■□□□ 1.46
CLN6-218ENST00000637223 NUDT16Q96DE0 195 aaKnown RBP24.18■■□□□ 1.46
CLN6-218ENST00000637223 USP32Q8NFA0 1604 aa24.17■■□□□ 1.46
CLN6-218ENST00000637223 EIF4G2P78344 907 aaKnown RBP eCLIP24.17■■□□□ 1.46
CLN6-218ENST00000637223 DDX17Q92841 729 aaKnown RBP24.17■■□□□ 1.46
CLN6-218ENST00000637223 ATP7BP35670 1465 aa24.17■■□□□ 1.46
CLN6-218ENST00000637223 HSPA5P11021 654 aaKnown RBP24.16■■□□□ 1.46
CLN6-218ENST00000637223 SHPRHQ149N8 1683 aa24.15■■□□□ 1.46
CLN6-218ENST00000637223 AHDC1Q5TGY3 1603 aaPredicted RBP24.15■■□□□ 1.46
CLN6-218ENST00000637223 PHF8Q9UPP1 1060 aa24.15■■□□□ 1.46
CLN6-218ENST00000637223 CDK12Q9NYV4 1490 aaPredicted RBP24.14■■□□□ 1.46
CLN6-218ENST00000637223 PMFBP1Q8TBY8 1022 aa24.14■■□□□ 1.45
CLN6-218ENST00000637223 AFF2P51816 1311 aa24.13■■□□□ 1.45
CLN6-218ENST00000637223 FOXO3O43524 673 aa24.12■■□□□ 1.45
CLN6-218ENST00000637223 CCDC61Q9Y6R9 512 aa24.11■■□□□ 1.45
CLN6-218ENST00000637223 RGPD8O14715 1765 aaPredicted RBP24.09■■□□□ 1.45
CLN6-218ENST00000637223 TMF1P82094 1093 aa24.09■■□□□ 1.45
CLN6-218ENST00000637223 XPCQ01831 940 aaPredicted RBP24.09■■□□□ 1.45
CLN6-218ENST00000637223 NPHP3Q7Z494 1330 aa24.09■■□□□ 1.45
CLN6-218ENST00000637223 SLC24A1O60721 1099 aa24.08■■□□□ 1.45
CLN6-218ENST00000637223 ZEB1P37275 1124 aaPredicted RBP24.08■■□□□ 1.45
CLN6-218ENST00000637223 PPIP5K1Q6PFW1 1433 aa24.08■■□□□ 1.44
CLN6-218ENST00000637223 NHSL1Q5SYE7 1610 aa24.07■■□□□ 1.44
CLN6-218ENST00000637223 NGDNQ8NEJ9 315 aaKnown RBP24.07■■□□□ 1.44
CLN6-218ENST00000637223 QTRT2Q9H974 415 aaKnown RBP24.07■■□□□ 1.44
CLN6-218ENST00000637223 KIF1AQ12756 1690 aa24.07■■□□□ 1.44
CLN6-218ENST00000637223 ATAD2Q6PL18 1390 aa24.06■■□□□ 1.44
CLN6-218ENST00000637223 CABP1Q9NZU7 370 aa24.06■■□□□ 1.44
CLN6-218ENST00000637223 SOS2Q07890 1332 aaPredicted RBP24.05■■□□□ 1.44
CLN6-218ENST00000637223 TOPAZ1Q8N9V7 1692 aa24.05■■□□□ 1.44
CLN6-218ENST00000637223 PLEKHG3A1L390 1219 aa24.04■■□□□ 1.44
CLN6-218ENST00000637223 RBM6P78332 1123 aaKnown RBP24.04■■□□□ 1.44
CLN6-218ENST00000637223 KRT28Q7Z3Y7 464 aa24.04■■□□□ 1.44
CLN6-218ENST00000637223 C8orf37Q96NL8 207 aa24.04■■□□□ 1.44
CLN6-218ENST00000637223 RGS12O14924 1447 aa24.03■■□□□ 1.44
CLN6-218ENST00000637223 PSME1Q06323 249 aa24.03■■□□□ 1.44
CLN6-218ENST00000637223 ITSN1Q15811 1721 aa24.03■■□□□ 1.44
CLN6-218ENST00000637223 ACEP12821 1306 aa24.03■■□□□ 1.44
CLN6-218ENST00000637223 PXDNQ92626 1479 aa24.02■■□□□ 1.44
CLN6-218ENST00000637223 TMC1Q8TDI8 760 aa24.01■■□□□ 1.43
CLN6-218ENST00000637223 PUS7Q96PZ0 661 aaKnown RBP24.01■■□□□ 1.43
CLN6-218ENST00000637223 LRRC59Q96AG4 307 aaKnown RBP24■■□□□ 1.43
CLN6-218ENST00000637223 POLR3AO14802 1390 aaPredicted RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms