RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 RSF1Q96T23 1441 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 MAP4K4O95819 1239 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 SMG6Q86US8 1419 aaKnown RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 NECTIN2Q92692 538 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 TPM3P06753 285 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 NUCB2P80303 420 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 NEK4P51957 841 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 ADCY5O95622 1261 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 CAGE1Q8TC20 777 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 RABEP2Q9H5N1 569 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 CT47A1Q5JQC4 288 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-214ENST00000620676 KIF15Q9NS87 1388 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 CCDC102AQ96A19 550 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 USP25Q9UHP3 1055 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 NOLC1Q14978 699 aaKnown RBP eCLIP6.07□□□□□ -1.444e-7■■■■■ 35.6
VPS13D-214ENST00000620676 ZSWIM4Q9H7M6 989 aa6.07□□□□□ -1.44
VPS13D-214ENST00000620676 NBPF1Q3BBV0 1214 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 DDX54Q8TDD1 881 aaKnown RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 PRIM1P49642 420 aaKnown RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 MNAT1P51948 309 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 ZKSCAN2Q63HK3 967 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 PCMTD1Q96MG8 357 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 STK26Q9P289 416 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 WRNQ14191 1432 aaPredicted RBP eCLIP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 BRPF1P55201 1214 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 RSPH14Q9UHP6 348 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 SMC3Q9UQE7 1217 aa6.06□□□□□ -1.44
VPS13D-214ENST00000620676 DZIP1LQ8IYY4 767 aaKnown RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 K7ELQ4 463 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-214ENST00000620676 LOC102724159A0A0B4J2E5 919 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 NAP1L1P55209 391 aaKnown RBP6.05□□□□□ -1.44
VPS13D-214ENST00000620676 PWP2Q15269 919 aaKnown RBP6.05□□□□□ -1.44
VPS13D-214ENST00000620676 BANK1Q8NDB2 785 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 KLHL34Q8N239 644 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS13D-214ENST00000620676 ABCC8Q09428 1581 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 DMTNQ08495 405 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 KRBA2Q6ZNG9 492 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 HDAC5Q9UQL6 1122 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 ATP2C2O75185 946 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 DTNBO60941 627 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 TSPY4P0CV99 314 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 TSPY10P0CW01 314 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 PPFIA3O75145 1194 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 ISM2Q6H9L7 571 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 PNISRQ8TF01 805 aaKnown RBP6.05□□□□□ -1.44
VPS13D-214ENST00000620676 FAM107BQ9H098 131 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 CDR1P51861 262 aa6.05□□□□□ -1.44
VPS13D-214ENST00000620676 CCDC88BA6NC98 1476 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 LRRFIP2Q9Y608 721 aaKnown RBP6.04□□□□□ -1.44
VPS13D-214ENST00000620676 CT47B1P0C2W7 299 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-214ENST00000620676 TNMDQ9H2S6 317 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 SDF4Q9BRK5 362 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 NOB1Q9ULX3 412 aaKnown RBP6.04□□□□□ -1.44
VPS13D-214ENST00000620676 KRT222Q8N1A0 295 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 CCDC7Q96M83 1385 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 KIAA0754O94854 1291 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 NUTM2DQ5VT03 806 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-214ENST00000620676 LIG1P18858 919 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 CKAP2LQ8IYA6 745 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 RBSNQ9H1K0 784 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 STAC3Q96MF2 364 aa6.04□□□□□ -1.44
VPS13D-214ENST00000620676 TTC31Q49AM3 519 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-214ENST00000620676 TDO2P48775 406 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 REC8O95072 547 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 BAG4O95429 457 aaKnown RBP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 CEP135Q66GS9 1140 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 RBM42Q9BTD8 480 aaKnown RBP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 SMARCA5O60264 1052 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 RUFY1Q96T51 708 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 RRP12Q5JTH9 1297 aaKnown RBP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 FRMD3A2A2Y4 597 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 CDC45O75419 566 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 CFDP1Q9UEE9 299 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 STK3Q13188 491 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13D-214ENST00000620676 VPS8Q8N3P4 1428 aa6.03□□□□□ -1.44
VPS13D-214ENST00000620676 CGNL1Q0VF96 1302 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 TSR1Q2NL82 804 aaKnown RBP6.02□□□□□ -1.45
VPS13D-214ENST00000620676 SYTL4Q96C24 671 aaPredicted RBP6.02□□□□□ -1.45
VPS13D-214ENST00000620676 GIMAP6Q6P9H5 292 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 ATP6V1DQ9Y5K8 247 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 CHAMP1Q96JM3 812 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 TSR2Q969E8 191 aaKnown RBP6.02□□□□□ -1.45
VPS13D-214ENST00000620676 USP47Q96K76 1375 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13D-214ENST00000620676 TMCO3Q6UWJ1 677 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 FAM184AQ8NB25 1140 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 RASSF8Q8NHQ8 419 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 WDR97A6NE52 1622 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 DNAJC21Q5F1R6 531 aaKnown RBP6.02□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC70Q6NSX1 233 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 PTGS1P23219 599 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 CDCA8Q53HL2 280 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 CEP57Q86XR8 500 aa6.02□□□□□ -1.45
VPS13D-214ENST00000620676 C8orf34Q49A92 452 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 DNAAF4Q8WXU2 420 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC192P0DO97 292 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 ISY1Q9ULR0 285 aaKnown RBP6.01□□□□□ -1.45
VPS13D-214ENST00000620676 RIOK3O14730 519 aaKnown RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms