RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.53■□□□□ 0.88
CPSF1-213ENST00000620219 PPP4R2Q9NY27 417 aa20.53■□□□□ 0.88
CPSF1-213ENST00000620219 RNF17Q9BXT8 1623 aaKnown RBP20.53■□□□□ 0.88
CPSF1-213ENST00000620219 PPRC1Q5VV67 1664 aaKnown RBP20.53■□□□□ 0.88
CPSF1-213ENST00000620219 ATAD2Q6PL18 1390 aa20.52■□□□□ 0.88
CPSF1-213ENST00000620219 HMOX1P09601 288 aa20.52■□□□□ 0.88
CPSF1-213ENST00000620219 AMPHP49418 695 aa20.51■□□□□ 0.87
CPSF1-213ENST00000620219 PROSER2Q86WR7 435 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-213ENST00000620219 KIF1BO60333 1816 aa20.51■□□□□ 0.87
CPSF1-213ENST00000620219 YTHDC2Q9H6S0 1430 aaKnown RBP20.51■□□□□ 0.87
CPSF1-213ENST00000620219 ERVK-7P63135 1459 aa20.5■□□□□ 0.87
CPSF1-213ENST00000620219 DIAPH1O60610 1272 aaKnown RBP20.5■□□□□ 0.87
CPSF1-213ENST00000620219 ESCO1Q5FWF5 840 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 PARD3Q8TEW0 1356 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 GLI2P10070 1586 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 NME9Q86XW9 330 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 FRMPD1Q5SYB0 1578 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 PSME1Q06323 249 aa20.49■□□□□ 0.87
CPSF1-213ENST00000620219 RRS1Q15050 365 aaKnown RBP20.48■□□□□ 0.87
CPSF1-213ENST00000620219 XPCQ01831 940 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-213ENST00000620219 NLRP6P59044 892 aa20.47■□□□□ 0.87
CPSF1-213ENST00000620219 HSPA2P54652 639 aa20.46■□□□□ 0.87
CPSF1-213ENST00000620219 ARHGAP31Q2M1Z3 1444 aa20.45■□□□□ 0.86
CPSF1-213ENST00000620219 PLEKHH1Q9ULM0 1364 aa20.45■□□□□ 0.86
CPSF1-213ENST00000620219 ERICH6Q7L0X2 663 aa20.45■□□□□ 0.86
CPSF1-213ENST00000620219 MAP3K4Q9Y6R4 1608 aa20.45■□□□□ 0.86
CPSF1-213ENST00000620219 TMEM2Q9UHN6 1383 aa20.44■□□□□ 0.86
CPSF1-213ENST00000620219 BCL2L13Q9BXK5 485 aa20.44■□□□□ 0.86
CPSF1-213ENST00000620219 PIK3C2GO75747 1445 aa20.44■□□□□ 0.86
CPSF1-213ENST00000620219 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
CPSF1-213ENST00000620219 PNNQ9H307 717 aaKnown RBP20.44■□□□□ 0.86
CPSF1-213ENST00000620219 PDE3BQ13370 1112 aa20.43■□□□□ 0.86
CPSF1-213ENST00000620219 MADDQ8WXG6 1647 aa20.43■□□□□ 0.86
CPSF1-213ENST00000620219 TSHZ2Q9NRE2 1034 aa20.43■□□□□ 0.86
CPSF1-213ENST00000620219 ZRANB1Q9UGI0 708 aa20.43■□□□□ 0.86
CPSF1-213ENST00000620219 KCNA6P17658 529 aa20.43■□□□□ 0.86
CPSF1-213ENST00000620219 ABTB2Q8N961 1025 aa20.42■□□□□ 0.86
CPSF1-213ENST00000620219 MROH1Q8NDA8 1641 aa20.42■□□□□ 0.86
CPSF1-213ENST00000620219 METP08581 1390 aa20.42■□□□□ 0.86
CPSF1-213ENST00000620219 MYOM2P54296 1465 aa20.42■□□□□ 0.86
CPSF1-213ENST00000620219 RUNDC1Q96C34 613 aa20.41■□□□□ 0.86
CPSF1-213ENST00000620219 FYB1O15117 783 aa20.41■□□□□ 0.86
CPSF1-213ENST00000620219 LMTK2Q8IWU2 1503 aa20.41■□□□□ 0.86
CPSF1-213ENST00000620219 ELL2O00472 640 aaPredicted RBP20.39■□□□□ 0.86
CPSF1-213ENST00000620219 EXOC6Q8TAG9 804 aa20.39■□□□□ 0.86
CPSF1-213ENST00000620219 EMILIN1Q9Y6C2 1016 aa20.39■□□□□ 0.85
CPSF1-213ENST00000620219 CAMSAP1Q5T5Y3 1602 aa20.39■□□□□ 0.85
CPSF1-213ENST00000620219 DEPDC5O75140 1603 aa20.39■□□□□ 0.85
CPSF1-213ENST00000620219 ZNF692Q9BU19 519 aaPredicted RBP20.38■□□□□ 0.85
CPSF1-213ENST00000620219 ATF3P18847 181 aa20.38■□□□□ 0.85
CPSF1-213ENST00000620219 RIPK4P57078 832 aa20.38■□□□□ 0.85
CPSF1-213ENST00000620219 CLUAP1Q96AJ1 413 aa20.38■□□□□ 0.85
CPSF1-213ENST00000620219 A0A1W2PP64 1363 aa20.37■□□□□ 0.85
CPSF1-213ENST00000620219 LRPPRCP42704 1394 aaKnown RBP20.37■□□□□ 0.85
CPSF1-213ENST00000620219 A0A0G2JS52 829 aa20.37■□□□□ 0.85
CPSF1-213ENST00000620219 ACEP12821 1306 aa20.37■□□□□ 0.85
CPSF1-213ENST00000620219 RRP1P56182 461 aaKnown RBP20.36■□□□□ 0.85
CPSF1-213ENST00000620219 ASXL1Q8IXJ9 1541 aa20.36■□□□□ 0.85
CPSF1-213ENST00000620219 FTSJ3Q8IY81 847 aaKnown RBP20.36■□□□□ 0.85
CPSF1-213ENST00000620219 VWDEQ8N2E2 1590 aa20.36■□□□□ 0.85
CPSF1-213ENST00000620219 ANKRD36BQ8N2N9 1353 aa20.36■□□□□ 0.85
CPSF1-213ENST00000620219 CLTCQ00610 1675 aaKnown RBP20.35■□□□□ 0.85
CPSF1-213ENST00000620219 PRKAR2BP31323 418 aa20.35■□□□□ 0.85
CPSF1-213ENST00000620219 RICTORQ6R327 1708 aa20.35■□□□□ 0.85
CPSF1-213ENST00000620219 FOXO3O43524 673 aa20.35■□□□□ 0.85
CPSF1-213ENST00000620219 A2ML1A8K2U0 1454 aa20.34■□□□□ 0.85
CPSF1-213ENST00000620219 ADGRB3O60242 1522 aa20.34■□□□□ 0.85
CPSF1-213ENST00000620219 SMG6Q86US8 1419 aaKnown RBP20.33■□□□□ 0.85
CPSF1-213ENST00000620219 RTF1Q92541 710 aaKnown RBP20.33■□□□□ 0.85
CPSF1-213ENST00000620219 MYH16Q9H6N6 1097 aa20.33■□□□□ 0.84
CPSF1-213ENST00000620219 TBX22Q9Y458 520 aa20.33■□□□□ 0.84
CPSF1-213ENST00000620219 CSB-PGBD3P0DP91 1061 aa20.33■□□□□ 0.84
CPSF1-213ENST00000620219 NPM2Q86SE8 214 aaKnown RBP20.33■□□□□ 0.84
CPSF1-213ENST00000620219 PPIP5K1Q6PFW1 1433 aa20.33■□□□□ 0.84
CPSF1-213ENST00000620219 E9PSI1 815 aa20.32■□□□□ 0.84
CPSF1-213ENST00000620219 TCERG1O14776 1098 aaKnown RBP20.31■□□□□ 0.84
CPSF1-213ENST00000620219 MROH2AA6NES4 1674 aa20.31■□□□□ 0.84
CPSF1-213ENST00000620219 POLR1AO95602 1720 aaPredicted RBP20.29■□□□□ 0.84
CPSF1-213ENST00000620219 SULT6B1Q6IMI4 303 aa20.28■□□□□ 0.84
CPSF1-213ENST00000620219 ABCC11Q96J66 1382 aa20.28■□□□□ 0.84
CPSF1-213ENST00000620219 CRBNQ96SW2 442 aa20.28■□□□□ 0.84
CPSF1-213ENST00000620219 SMC4Q9NTJ3 1288 aa20.27■□□□□ 0.84
CPSF1-213ENST00000620219 TSR2Q969E8 191 aaKnown RBP20.27■□□□□ 0.84
CPSF1-213ENST00000620219 PHF8Q9UPP1 1060 aa20.27■□□□□ 0.84
CPSF1-213ENST00000620219 SYNMO15061 1565 aa20.27■□□□□ 0.84
CPSF1-213ENST00000620219 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.83
CPSF1-213ENST00000620219 ZMYM4Q5VZL5 1548 aa20.26■□□□□ 0.83
CPSF1-213ENST00000620219 RBM19Q9Y4C8 960 aaKnown RBP20.26■□□□□ 0.83
CPSF1-213ENST00000620219 SBNO2Q9Y2G9 1366 aa20.26■□□□□ 0.83
CPSF1-213ENST00000620219 ZBTB47Q9UFB7 747 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-213ENST00000620219 AGLP35573 1532 aa20.25■□□□□ 0.83
CPSF1-213ENST00000620219 THUMPD2Q9BTF0 503 aaKnown RBP20.24■□□□□ 0.83
CPSF1-213ENST00000620219 ROBO2Q9HCK4 1378 aa20.24■□□□□ 0.83
CPSF1-213ENST00000620219 RGS3P49796 1198 aa20.24■□□□□ 0.83
CPSF1-213ENST00000620219 KDM5AP29375 1690 aaKnown RBP20.24■□□□□ 0.83
CPSF1-213ENST00000620219 PUS7Q96PZ0 661 aaKnown RBP20.23■□□□□ 0.83
CPSF1-213ENST00000620219 ERICH6BQ5W0A0 696 aa20.23■□□□□ 0.83
CPSF1-213ENST00000620219 WWC1Q8IX03 1113 aa20.23■□□□□ 0.83
CPSF1-213ENST00000620219 TTC21BQ7Z4L5 1316 aa20.23■□□□□ 0.83
CPSF1-213ENST00000620219 BCAR3O75815 825 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms