RNA–Protein interactions for RNA: ENST00000616352.4

ACACA-238, Transcript of acetyl-CoA carboxylase alpha, human

TSL 1 (best)

Gene ACACA, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACACA-238	ENST00000616352	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.3	■■■□□ 2.76
ACACA-238	ENST00000616352	LTBP4	Q8N2S1	1624 aa		32.28	■■■□□ 2.76
ACACA-238	ENST00000616352	LRRC7	Q96NW7	1537 aa		32.27	■■■□□ 2.76
ACACA-238	ENST00000616352	TULP4	Q9NRJ4	1543 aa		32.26	■■■□□ 2.76
ACACA-238	ENST00000616352	PROSER2	Q86WR7	435 aa	Predicted RBP	32.25	■■■□□ 2.75
ACACA-238	ENST00000616352	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.24	■■■□□ 2.75
ACACA-238	ENST00000616352	NCOA3	Q9Y6Q9	1424 aa		32.23	■■■□□ 2.75
ACACA-238	ENST00000616352	ADGRL3	Q9HAR2	1447 aa		32.22	■■■□□ 2.75
ACACA-238	ENST00000616352	SLC24A1	O60721	1099 aa		32.22	■■■□□ 2.75
ACACA-238	ENST00000616352	TMEM94	Q12767	1356 aa		32.22	■■■□□ 2.75
ACACA-238	ENST00000616352	DISP3	Q9P2K9	1392 aa		32.22	■■■□□ 2.75
ACACA-238	ENST00000616352	RBM33	Q96EV2	1170 aa	Known RBP	32.21	■■■□□ 2.75
ACACA-238	ENST00000616352	CDC42BPG	Q6DT37	1551 aa		32.2	■■■□□ 2.74
ACACA-238	ENST00000616352	C11orf95	C9JLR9	678 aa	Predicted RBP	32.18	■■■□□ 2.74
ACACA-238	ENST00000616352	TMF1	P82094	1093 aa		32.18	■■■□□ 2.74
ACACA-238	ENST00000616352	FMN2	Q9NZ56	1722 aa		32.17	■■■□□ 2.74
ACACA-238	ENST00000616352	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.16	■■■□□ 2.74
ACACA-238	ENST00000616352	EVC2	Q86UK5	1308 aa		32.15	■■■□□ 2.74
ACACA-238	ENST00000616352	WASL	O00401	505 aa	Predicted RBP	32.12	■■■□□ 2.73
ACACA-238	ENST00000616352	RGPD8	O14715	1765 aa	Predicted RBP	32.12	■■■□□ 2.73
ACACA-238	ENST00000616352	KIF7	Q2M1P5	1343 aa		32.1	■■■□□ 2.73
ACACA-238	ENST00000616352	WASHC2A	Q641Q2	1341 aa		32.1	■■■□□ 2.73
ACACA-238	ENST00000616352	USP32	Q8NFA0	1604 aa		32.1	■■■□□ 2.73
ACACA-238	ENST00000616352	CCDC7	Q96M83	1385 aa		32.09	■■■□□ 2.73
ACACA-238	ENST00000616352	CDK19	Q9BWU1	502 aa		32.09	■■■□□ 2.73
ACACA-238	ENST00000616352	C19orf44	Q9H6X5	657 aa		32.09	■■■□□ 2.73
ACACA-238	ENST00000616352	MYOM1	P52179	1685 aa		32.09	■■■□□ 2.73
ACACA-238	ENST00000616352	DCC	P43146	1447 aa		32.09	■■■□□ 2.73
ACACA-238	ENST00000616352	C14orf37	Q86TY3	774 aa		32.08	■■■□□ 2.73
ACACA-238	ENST00000616352	PUS7	Q96PZ0	661 aa	Known RBP	32.08	■■■□□ 2.73
ACACA-238	ENST00000616352	CDCA8	Q53HL2	280 aa		32.07	■■■□□ 2.72
ACACA-238	ENST00000616352	TOPAZ1	Q8N9V7	1692 aa		32.07	■■■□□ 2.72
ACACA-238	ENST00000616352	ITSN1	Q15811	1721 aa		32.05	■■■□□ 2.72
ACACA-238	ENST00000616352	MSH6	P52701	1360 aa		32.05	■■■□□ 2.72
ACACA-238	ENST00000616352	ATP7B	P35670	1465 aa		32.05	■■■□□ 2.72
ACACA-238	ENST00000616352	CABP2	Q9NPB3	220 aa		32.04	■■■□□ 2.72
ACACA-238	ENST00000616352	SRPK2	P78362	688 aa	Known RBP	32.04	■■■□□ 2.72
ACACA-238	ENST00000616352	ANKAR	Q7Z5J8	1434 aa		32	■■■□□ 2.71
ACACA-238	ENST00000616352	ATAD2	Q6PL18	1390 aa		32	■■■□□ 2.71
ACACA-238	ENST00000616352	PRR36	Q9H6K5	1346 aa		31.99	■■■□□ 2.71
ACACA-238	ENST00000616352	NUDT16	Q96DE0	195 aa	Known RBP	31.96	■■■□□ 2.71
ACACA-238	ENST00000616352	POLR3GL	Q9BT43	218 aa		31.96	■■■□□ 2.71
ACACA-238	ENST00000616352	ATF3	P18847	181 aa		31.95	■■■□□ 2.71
ACACA-238	ENST00000616352	CADPS2	Q86UW7	1296 aa		31.95	■■■□□ 2.71
ACACA-238	ENST00000616352	MST1R	Q04912	1400 aa		31.95	■■■□□ 2.71
ACACA-238	ENST00000616352	IQSEC2	Q5JU85	1478 aa		31.94	■■■□□ 2.7
ACACA-238	ENST00000616352	NUTM2F	A1L443	756 aa		31.93	■■■□□ 2.7
ACACA-238	ENST00000616352	CCDC61	Q9Y6R9	512 aa		31.92	■■■□□ 2.7
ACACA-238	ENST00000616352	C1orf167	Q5SNV9	1468 aa		31.91	■■■□□ 2.7
ACACA-238	ENST00000616352	NINL	Q9Y2I6	1382 aa		31.91	■■■□□ 2.7
ACACA-238	ENST00000616352	PPIP5K1	Q6PFW1	1433 aa		31.9	■■■□□ 2.7
ACACA-238	ENST00000616352	AKAP12	Q02952	1782 aa		31.9	■■■□□ 2.7
ACACA-238	ENST00000616352	SLC12A5	Q9H2X9	1139 aa		31.86	■■■□□ 2.69
ACACA-238	ENST00000616352	KIF1A	Q12756	1690 aa		31.86	■■■□□ 2.69
ACACA-238	ENST00000616352	CD163L1	Q9NR16	1453 aa		31.86	■■■□□ 2.69
ACACA-238	ENST00000616352	CABP1	Q9NZU7	370 aa		31.85	■■■□□ 2.69
ACACA-238	ENST00000616352	TMC1	Q8TDI8	760 aa		31.84	■■■□□ 2.69
ACACA-238	ENST00000616352	MON2	Q7Z3U7	1717 aa		31.84	■■■□□ 2.69
ACACA-238	ENST00000616352	PLEKHG3	A1L390	1219 aa		31.82	■■■□□ 2.69
ACACA-238	ENST00000616352	CERK	Q8TCT0	537 aa		31.82	■■■□□ 2.68
ACACA-238	ENST00000616352	DDX10	Q13206	875 aa	Known RBP	31.8	■■■□□ 2.68
ACACA-238	ENST00000616352	SLAIN2	Q9P270	581 aa		31.8	■■■□□ 2.68
ACACA-238	ENST00000616352	CPSF1	Q10570	1443 aa	Known RBP	31.79	■■■□□ 2.68
ACACA-238	ENST00000616352	ANKRD36B	Q8N2N9	1353 aa		31.79	■■■□□ 2.68
ACACA-238	ENST00000616352	ORAI2	Q96SN7	254 aa		31.78	■■■□□ 2.68
ACACA-238	ENST00000616352	POLR3A	O14802	1390 aa	Predicted RBP	31.78	■■■□□ 2.68
ACACA-238	ENST00000616352	ESCO1	Q5FWF5	840 aa		31.78	■■■□□ 2.68
ACACA-238	ENST00000616352		A0A1W2PP64	1363 aa		31.77	■■■□□ 2.68
ACACA-238	ENST00000616352	PHF8	Q9UPP1	1060 aa		31.77	■■■□□ 2.68
ACACA-238	ENST00000616352	PMFBP1	Q8TBY8	1022 aa		31.75	■■■□□ 2.67
ACACA-238	ENST00000616352	PANK3	Q9H999	370 aa		31.75	■■■□□ 2.67
ACACA-238	ENST00000616352	NRK	Q7Z2Y5	1582 aa		31.75	■■■□□ 2.67
ACACA-238	ENST00000616352	ACE	P12821	1306 aa		31.74	■■■□□ 2.67
ACACA-238	ENST00000616352	TERF2IP	Q9NYB0	399 aa		31.74	■■■□□ 2.67
ACACA-238	ENST00000616352	ROBO1	Q9Y6N7	1651 aa		31.74	■■■□□ 2.67
ACACA-238	ENST00000616352	BRINP3	Q76B58	766 aa		31.71	■■■□□ 2.67
ACACA-238	ENST00000616352	NHSL1	Q5SYE7	1610 aa		31.71	■■■□□ 2.67
ACACA-238	ENST00000616352	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.7	■■■□□ 2.66
ACACA-238	ENST00000616352	CARD14	Q9BXL6	1004 aa		31.69	■■■□□ 2.66
ACACA-238	ENST00000616352	TOM1	O60784	492 aa		31.68	■■■□□ 2.66
ACACA-238	ENST00000616352	NGDN	Q8NEJ9	315 aa	Known RBP	31.68	■■■□□ 2.66
ACACA-238	ENST00000616352	USP6	P35125	1406 aa		31.68	■■■□□ 2.66
ACACA-238	ENST00000616352	KTN1	Q86UP2	1357 aa	Known RBP	31.68	■■■□□ 2.66
ACACA-238	ENST00000616352	PER1	O15534	1290 aa	Predicted RBP	31.67	■■■□□ 2.66
ACACA-238	ENST00000616352	ZNF692	Q9BU19	519 aa	Predicted RBP	31.67	■■■□□ 2.66
ACACA-238	ENST00000616352	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.66	■■■□□ 2.66
ACACA-238	ENST00000616352	NSD3	Q9BZ95	1437 aa		31.65	■■■□□ 2.66
ACACA-238	ENST00000616352	KIF20B	Q96Q89	1820 aa		31.65	■■■□□ 2.66
ACACA-238	ENST00000616352	EDC4	Q6P2E9	1401 aa	Known RBP	31.65	■■■□□ 2.66
ACACA-238	ENST00000616352	SSH2	Q76I76	1423 aa		31.65	■■■□□ 2.66
ACACA-238	ENST00000616352	FOXO3	O43524	673 aa		31.64	■■■□□ 2.65
ACACA-238	ENST00000616352	UBAP1L	F5GYI3	381 aa		31.63	■■■□□ 2.65
ACACA-238	ENST00000616352	PXDN	Q92626	1479 aa		31.61	■■■□□ 2.65
ACACA-238	ENST00000616352	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.6	■■■□□ 2.65
ACACA-238	ENST00000616352	BRD4	O60885	1362 aa	Predicted RBP	31.6	■■■□□ 2.65
ACACA-238	ENST00000616352	NPHP3	Q7Z494	1330 aa		31.6	■■■□□ 2.65
ACACA-238	ENST00000616352	ANKRD26	Q9UPS8	1709 aa		31.59	■■■□□ 2.65
ACACA-238	ENST00000616352	PSME1	Q06323	249 aa		31.57	■■■□□ 2.64
ACACA-238	ENST00000616352	DDX17	Q92841	729 aa	Known RBP	31.57	■■■□□ 2.64
ACACA-238	ENST00000616352	KNSTRN	Q9Y448	316 aa		31.57	■■■□□ 2.64

Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms