RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 WDR63Q8IWG1 891 aa15.73■□□□□ 0.11
LIG1-221ENST00000613670 MRE11P49959 708 aa15.72■□□□□ 0.11
LIG1-221ENST00000613670 HDGFL2Q7Z4V5 671 aaPredicted RBP15.72■□□□□ 0.11
LIG1-221ENST00000613670 ZMYM4Q5VZL5 1548 aa15.72■□□□□ 0.11
LIG1-221ENST00000613670 CASC1Q6TDU7 716 aa15.72■□□□□ 0.11
LIG1-221ENST00000613670 CHMP4BQ9H444 224 aaKnown RBP15.72■□□□□ 0.11
LIG1-221ENST00000613670 KIF21AQ7Z4S6 1674 aa15.72■□□□□ 0.11
LIG1-221ENST00000613670 TERF2IPQ9NYB0 399 aa15.71■□□□□ 0.11
LIG1-221ENST00000613670 HMOX1P09601 288 aa15.71■□□□□ 0.1
LIG1-221ENST00000613670 AAMPQ13685 434 aa15.71■□□□□ 0.1
LIG1-221ENST00000613670 NOL8Q76FK4 1167 aaKnown RBP15.7■□□□□ 0.1
LIG1-221ENST00000613670 SSH1Q8WYL5 1049 aa15.7■□□□□ 0.1
LIG1-221ENST00000613670 CALD1Q05682 793 aaKnown RBP15.7■□□□□ 0.1
LIG1-221ENST00000613670 DNTTIP2Q5QJE6 756 aaKnown RBP15.7■□□□□ 0.1
LIG1-221ENST00000613670 ATF7IPQ6VMQ6 1270 aa15.7■□□□□ 0.1
LIG1-221ENST00000613670 PLPPR3Q6T4P5 718 aa15.69■□□□□ 0.1
LIG1-221ENST00000613670 TMEM57Q8N5G2 664 aa15.69■□□□□ 0.1
LIG1-221ENST00000613670 SCAF11Q99590 1463 aaKnown RBP15.69■□□□□ 0.1
LIG1-221ENST00000613670 DIAPH1O60610 1272 aaKnown RBP15.69■□□□□ 0.1
LIG1-221ENST00000613670 XRCC6P12956 609 aaKnown RBP eCLIP15.69■□□□□ 0.1
LIG1-221ENST00000613670 PLCB2Q00722 1185 aa15.69■□□□□ 0.1
LIG1-221ENST00000613670 NINLQ9Y2I6 1382 aa15.68■□□□□ 0.1
LIG1-221ENST00000613670 GRPEL1Q9HAV7 217 aa15.68■□□□□ 0.1
LIG1-221ENST00000613670 FOXD4L6Q3SYB3 417 aaPredicted RBP15.67■□□□□ 0.1
LIG1-221ENST00000613670 FOXD4L3Q6VB84 417 aaPredicted RBP15.67■□□□□ 0.1
LIG1-221ENST00000613670 SCAPERQ9BY12 1400 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 MAGI2Q86UL8 1455 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 ASXL1Q8IXJ9 1541 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 SYCP2Q9BX26 1530 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 TARBP1Q13395 1621 aaKnown RBP15.67■□□□□ 0.1
LIG1-221ENST00000613670 GPRASP1Q5JY77 1395 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 TRIM27P14373 513 aa15.67■□□□□ 0.1
LIG1-221ENST00000613670 RRAGDQ9NQL2 400 aaPredicted RBP15.66■□□□□ 0.1
LIG1-221ENST00000613670 PBRM1Q86U86 1689 aa15.66■□□□□ 0.1
LIG1-221ENST00000613670 KIF16BQ96L93 1317 aa15.65■□□□□ 0.1
LIG1-221ENST00000613670 ZNF521Q96K83 1311 aa15.65■□□□□ 0.1
LIG1-221ENST00000613670 SHANK2Q9UPX8 1470 aa15.65■□□□□ 0.1
LIG1-221ENST00000613670 VGFO15240 615 aaPredicted RBP15.64■□□□□ 0.09
LIG1-221ENST00000613670 TMPOP42166 694 aaKnown RBP15.64■□□□□ 0.09
LIG1-221ENST00000613670 THUMPD2Q9BTF0 503 aaKnown RBP15.64■□□□□ 0.09
LIG1-221ENST00000613670 MCTP1Q6DN14 999 aa15.64■□□□□ 0.09
LIG1-221ENST00000613670 SKOR2Q2VWA4 1001 aaPredicted RBP15.63■□□□□ 0.09
LIG1-221ENST00000613670 SLC4A10Q6U841 1118 aa15.63■□□□□ 0.09
LIG1-221ENST00000613670 PLEKHG5O94827 1062 aa15.63■□□□□ 0.09
LIG1-221ENST00000613670 PRKAR2BP31323 418 aa15.63■□□□□ 0.09
LIG1-221ENST00000613670 ESPNB1AK53 854 aa15.62■□□□□ 0.09
LIG1-221ENST00000613670 PIK3C2GO75747 1445 aa15.62■□□□□ 0.09
LIG1-221ENST00000613670 CHD1LQ86WJ1 897 aa15.62■□□□□ 0.09
LIG1-221ENST00000613670 ESF1Q9H501 851 aaKnown RBP15.62■□□□□ 0.09
LIG1-221ENST00000613670 PTMSP20962 102 aa15.61■□□□□ 0.09
LIG1-221ENST00000613670 NASPP49321 788 aaPredicted RBP15.61■□□□□ 0.09
LIG1-221ENST00000613670 NUP160Q12769 1436 aa15.6■□□□□ 0.09
LIG1-221ENST00000613670 ADGBQ8N7X0 1667 aa15.6■□□□□ 0.09
LIG1-221ENST00000613670 MLECQ14165 292 aa15.6■□□□□ 0.09
LIG1-221ENST00000613670 TNPO1Q92973 898 aaKnown RBP15.6■□□□□ 0.09
LIG1-221ENST00000613670 TRMT2AQ8IZ69 625 aaKnown RBP15.6■□□□□ 0.09
LIG1-221ENST00000613670 NUTM2FA1L443 756 aa15.59■□□□□ 0.09
LIG1-221ENST00000613670 PLA2R1Q13018 1463 aa15.59■□□□□ 0.09
LIG1-221ENST00000613670 CAVIN1Q6NZI2 390 aaKnown RBP15.59■□□□□ 0.09
LIG1-221ENST00000613670 FBLN1P23142 703 aa15.58■□□□□ 0.09
LIG1-221ENST00000613670 USP19O94966 1318 aa15.58■□□□□ 0.08
LIG1-221ENST00000613670 INSRP06213 1382 aa15.58■□□□□ 0.08
LIG1-221ENST00000613670 ST18O60284 1047 aa15.57■□□□□ 0.08
LIG1-221ENST00000613670 TRIM6-TRIM34B2RNG4 842 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 RBM42Q9BTD8 480 aaKnown RBP15.56■□□□□ 0.08
LIG1-221ENST00000613670 ABCC10Q5T3U5 1492 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 TRAPPC8Q9Y2L5 1435 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 K7ELQ4 463 aaPredicted RBP15.56■□□□□ 0.08
LIG1-221ENST00000613670 CDC45O75419 566 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 SSFA2P28290 1259 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 WDR7Q9Y4E6 1490 aa15.56■□□□□ 0.08
LIG1-221ENST00000613670 KDM5DQ9BY66 1539 aa15.55■□□□□ 0.08
LIG1-221ENST00000613670 RNF214Q8ND24 703 aa15.55■□□□□ 0.08
LIG1-221ENST00000613670 PRAM1Q96QH2 718 aa15.55■□□□□ 0.08
LIG1-221ENST00000613670 FAM13BQ9NYF5 915 aa15.55■□□□□ 0.08
LIG1-221ENST00000613670 POLR3AO14802 1390 aaPredicted RBP15.55■□□□□ 0.08
LIG1-221ENST00000613670 CEP170Q5SW79 1584 aa15.54■□□□□ 0.08
LIG1-221ENST00000613670 NOS1P29475 1434 aa15.54■□□□□ 0.08
LIG1-221ENST00000613670 CT47B1P0C2W7 299 aaPredicted RBP15.54■□□□□ 0.08
LIG1-221ENST00000613670 UBE2Q2Q8WVN8 375 aa15.54■□□□□ 0.08
LIG1-221ENST00000613670 CABP1Q9NZU7 370 aa15.54■□□□□ 0.08
LIG1-221ENST00000613670 PRPF40AO75400 957 aaKnown RBP15.53■□□□□ 0.08
LIG1-221ENST00000613670 RBM10P98175 930 aaKnown RBP15.53■□□□□ 0.08
LIG1-221ENST00000613670 TWISTNBQ3B726 338 aaPredicted RBP15.53■□□□□ 0.08
LIG1-221ENST00000613670 RILPL2Q969X0 211 aa15.53■□□□□ 0.08
LIG1-221ENST00000613670 API5Q9BZZ5 524 aaKnown RBP15.53■□□□□ 0.08
LIG1-221ENST00000613670 R3HCC1Q9Y3T6 440 aaKnown RBP15.53■□□□□ 0.08
LIG1-221ENST00000613670 GNAI1P63096 354 aa15.52■□□□□ 0.08
LIG1-221ENST00000613670 C14orf37Q86TY3 774 aa15.52■□□□□ 0.08
LIG1-221ENST00000613670 EIF4G3O43432 1585 aaKnown RBP15.52■□□□□ 0.08
LIG1-221ENST00000613670 MCCP23508 829 aa15.52■□□□□ 0.07
LIG1-221ENST00000613670 GCC1Q96CN9 775 aa15.52■□□□□ 0.07
LIG1-221ENST00000613670 CFAP44Q96MT7 982 aa15.52■□□□□ 0.07
LIG1-221ENST00000613670 EIF2AK4Q9P2K8 1649 aaKnown RBP15.52■□□□□ 0.07
LIG1-221ENST00000613670 MPNDQ8N594 471 aa15.51■□□□□ 0.07
LIG1-221ENST00000613670 HDAC1Q13547 482 aaPredicted RBP15.51■□□□□ 0.07
LIG1-221ENST00000613670 DUOX2Q9NRD8 1548 aa15.51■□□□□ 0.07
LIG1-221ENST00000613670 NUCB2P80303 420 aa15.5■□□□□ 0.07
LIG1-221ENST00000613670 POLR1AO95602 1720 aaPredicted RBP15.5■□□□□ 0.07
LIG1-221ENST00000613670 TBC1D9Q6ZT07 1266 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms