RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 MLECQ14165 292 aa18.49■□□□□ 0.55
PCDHGA3-202ENST00000612467 MTHFSP49914 203 aa18.48■□□□□ 0.55
PCDHGA3-202ENST00000612467 RPGRIP1LQ68CZ1 1315 aa18.48■□□□□ 0.55
PCDHGA3-202ENST00000612467 MINK1Q8N4C8 1332 aaPredicted RBP18.48■□□□□ 0.55
PCDHGA3-202ENST00000612467 TULP4Q9NRJ4 1543 aa18.48■□□□□ 0.55
PCDHGA3-202ENST00000612467 TSPOAP1O95153 1857 aa18.47■□□□□ 0.55
PCDHGA3-202ENST00000612467 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
PCDHGA3-202ENST00000612467 SRPK2P78362 688 aaKnown RBP18.45■□□□□ 0.54
PCDHGA3-202ENST00000612467 ARHGEF28Q8N1W1 1705 aaKnown RBP18.45■□□□□ 0.54
PCDHGA3-202ENST00000612467 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
PCDHGA3-202ENST00000612467 PDE4AP27815 886 aa18.44■□□□□ 0.54
PCDHGA3-202ENST00000612467 TRMT2AQ8IZ69 625 aaKnown RBP18.44■□□□□ 0.54
PCDHGA3-202ENST00000612467 EVC2Q86UK5 1308 aa18.44■□□□□ 0.54
PCDHGA3-202ENST00000612467 WWC1Q8IX03 1113 aa18.43■□□□□ 0.54
PCDHGA3-202ENST00000612467 PRAM1Q96QH2 718 aa18.43■□□□□ 0.54
PCDHGA3-202ENST00000612467 GGNBP2Q9H3C7 697 aa18.43■□□□□ 0.54
PCDHGA3-202ENST00000612467 NOP58Q9Y2X3 529 aaKnown RBP18.43■□□□□ 0.54
PCDHGA3-202ENST00000612467 POLR3AO14802 1390 aaPredicted RBP18.43■□□□□ 0.54
PCDHGA3-202ENST00000612467 SHPRHQ149N8 1683 aa18.42■□□□□ 0.54
PCDHGA3-202ENST00000612467 CGNL1Q0VF96 1302 aa18.41■□□□□ 0.54
PCDHGA3-202ENST00000612467 ANP32AP39687 249 aaKnown RBP18.41■□□□□ 0.54
PCDHGA3-202ENST00000612467 TCP11L2Q8N4U5 519 aa18.41■□□□□ 0.54
PCDHGA3-202ENST00000612467 TCERG1O14776 1098 aaKnown RBP18.41■□□□□ 0.54
PCDHGA3-202ENST00000612467 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
PCDHGA3-202ENST00000612467 NKTRP30414 1462 aaKnown RBP18.4■□□□□ 0.54
PCDHGA3-202ENST00000612467 NBR1Q14596 966 aa18.4■□□□□ 0.54
PCDHGA3-202ENST00000612467 E9PSI1 815 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 FBLN1P23142 703 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 BCL2L13Q9BXK5 485 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 SLC52A1Q9NWF4 448 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 A0A1W2PP64 1363 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 PREX1Q8TCU6 1659 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 POGKQ9P215 609 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 TNNQ9UQP3 1299 aa18.39■□□□□ 0.53
PCDHGA3-202ENST00000612467 ARHGAP31Q2M1Z3 1444 aa18.38■□□□□ 0.53
PCDHGA3-202ENST00000612467 IPO9Q96P70 1041 aaKnown RBP18.38■□□□□ 0.53
PCDHGA3-202ENST00000612467 BACH2Q9BYV9 841 aa18.38■□□□□ 0.53
PCDHGA3-202ENST00000612467 KDM2BQ8NHM5 1336 aa18.38■□□□□ 0.53
PCDHGA3-202ENST00000612467 PANK1Q8TE04 598 aa18.37■□□□□ 0.53
PCDHGA3-202ENST00000612467 ANKRD36BQ8N2N9 1353 aa18.37■□□□□ 0.53
PCDHGA3-202ENST00000612467 U2AF1L5P0DN76 240 aaPredicted RBP18.37■□□□□ 0.53
PCDHGA3-202ENST00000612467 U2AF1Q01081 240 aaKnown RBP eCLIP18.37■□□□□ 0.53
PCDHGA3-202ENST00000612467 TMEM131LA2VDJ0 1609 aa18.37■□□□□ 0.53
PCDHGA3-202ENST00000612467 FRAT1Q92837 279 aaPredicted RBP18.36■□□□□ 0.53
PCDHGA3-202ENST00000612467 WAPLQ7Z5K2 1190 aa18.36■□□□□ 0.53
PCDHGA3-202ENST00000612467 RUNDC1Q96C34 613 aa18.36■□□□□ 0.53
PCDHGA3-202ENST00000612467 RGS3P49796 1198 aa18.35■□□□□ 0.53
PCDHGA3-202ENST00000612467 RIMBP3CA6NJZ7 1639 aa18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 RIMBP3BA6NNM3 1639 aa18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 RIMBP3Q9UFD9 1639 aa18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 U2SURPO15042 1029 aaKnown RBP18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 COG6Q9Y2V7 657 aa18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 PTPRMP28827 1452 aa18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.34■□□□□ 0.53
PCDHGA3-202ENST00000612467 YTHDC2Q9H6S0 1430 aaKnown RBP18.33■□□□□ 0.52
PCDHGA3-202ENST00000612467 CANXP27824 592 aaKnown RBP18.32■□□□□ 0.52
PCDHGA3-202ENST00000612467 CFAP53Q96M91 514 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 CDK19Q9BWU1 502 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 CABP1Q9NZU7 370 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 ZBTB47Q9UFB7 747 aaPredicted RBP18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 DIP2BQ9P265 1576 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 FYB1O15117 783 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 IGHDP01880 384 aa18.31■□□□□ 0.52
PCDHGA3-202ENST00000612467 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.3■□□□□ 0.52
PCDHGA3-202ENST00000612467 IQSEC2Q5JU85 1478 aa18.3■□□□□ 0.52
PCDHGA3-202ENST00000612467 TSR2Q969E8 191 aaKnown RBP18.29■□□□□ 0.52
PCDHGA3-202ENST00000612467 CLUAP1Q96AJ1 413 aa18.29■□□□□ 0.52
PCDHGA3-202ENST00000612467 CENPQQ7L2Z9 268 aaPredicted RBP18.29■□□□□ 0.52
PCDHGA3-202ENST00000612467 MS4A1P11836 297 aa18.29■□□□□ 0.52
PCDHGA3-202ENST00000612467 CLTCQ00610 1675 aaKnown RBP18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 CD163L1Q9NR16 1453 aa18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 RLBP1P12271 317 aa18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 ALKQ9UM73 1620 aa18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 ZFYVE9O95405 1425 aa18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 PPM1GO15355 546 aaPredicted RBP18.28■□□□□ 0.52
PCDHGA3-202ENST00000612467 USP32Q8NFA0 1604 aa18.27■□□□□ 0.52
PCDHGA3-202ENST00000612467 NCKAP5LQ9HCH0 1330 aa18.27■□□□□ 0.52
PCDHGA3-202ENST00000612467 ABCC11Q96J66 1382 aa18.27■□□□□ 0.52
PCDHGA3-202ENST00000612467 RARSP54136 660 aaKnown RBP18.27■□□□□ 0.51
PCDHGA3-202ENST00000612467 PHF23Q9BUL5 403 aaPredicted RBP18.26■□□□□ 0.51
PCDHGA3-202ENST00000612467 LAS1LQ9Y4W2 734 aaKnown RBP18.25■□□□□ 0.51
PCDHGA3-202ENST00000612467 SLC4A3P48751 1232 aa18.24■□□□□ 0.51
PCDHGA3-202ENST00000612467 PUS7Q96PZ0 661 aaKnown RBP18.23■□□□□ 0.51
PCDHGA3-202ENST00000612467 TERF2IPQ9NYB0 399 aa18.23■□□□□ 0.51
PCDHGA3-202ENST00000612467 ZRANB1Q9UGI0 708 aa18.23■□□□□ 0.51
PCDHGA3-202ENST00000612467 A2ML1A8K2U0 1454 aa18.22■□□□□ 0.51
PCDHGA3-202ENST00000612467 TXNDC2Q86VQ3 553 aa18.22■□□□□ 0.51
PCDHGA3-202ENST00000612467 C8orf34Q49A92 452 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 PLPPR3Q6T4P5 718 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 PLEKHF1Q96S99 279 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 NSD2O96028 1365 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 ATAD2Q6PL18 1390 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 NLRP1Q9C000 1473 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 RIMS2Q9UQ26 1411 aa18.21■□□□□ 0.51
PCDHGA3-202ENST00000612467 WDR63Q8IWG1 891 aa18.2■□□□□ 0.5
PCDHGA3-202ENST00000612467 ARHGEF40Q8TER5 1519 aa18.2■□□□□ 0.5
PCDHGA3-202ENST00000612467 HDGFL2Q7Z4V5 671 aaPredicted RBP18.2■□□□□ 0.5
PCDHGA3-202ENST00000612467 NGEFQ8N5V2 710 aa18.2■□□□□ 0.5
PCDHGA3-202ENST00000612467 TRIM35Q9UPQ4 493 aa18.2■□□□□ 0.5
PCDHGA3-202ENST00000612467 TMPOP42166 694 aaKnown RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms