RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	EIF3A	Q14152	1382 aa	Known RBP	28.3	■■■□□ 2.12
SHKBP1-222	ENST00000600320	NCOA3	Q9Y6Q9	1424 aa		28.29	■■■□□ 2.12
SHKBP1-222	ENST00000600320	ADGRL3	Q9HAR2	1447 aa		28.28	■■■□□ 2.12
SHKBP1-222	ENST00000600320	MINK1	Q8N4C8	1332 aa	Predicted RBP	28.27	■■■□□ 2.12
SHKBP1-222	ENST00000600320	QRICH2	Q9H0J4	1663 aa		28.27	■■■□□ 2.12
SHKBP1-222	ENST00000600320	ST20-MTHFS	A0A0A6YYL1	179 aa		28.26	■■■□□ 2.11
SHKBP1-222	ENST00000600320	C14orf37	Q86TY3	774 aa		28.26	■■■□□ 2.11
SHKBP1-222	ENST00000600320	HSPA5	P11021	654 aa	Known RBP	28.23	■■■□□ 2.11
SHKBP1-222	ENST00000600320	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.23	■■■□□ 2.11
SHKBP1-222	ENST00000600320	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.23	■■■□□ 2.11
SHKBP1-222	ENST00000600320	ADGRB2	O60241	1585 aa		28.21	■■■□□ 2.11
SHKBP1-222	ENST00000600320	C19orf44	Q9H6X5	657 aa		28.21	■■■□□ 2.11
SHKBP1-222	ENST00000600320	MSH6	P52701	1360 aa		28.21	■■■□□ 2.11
SHKBP1-222	ENST00000600320	TESK2	Q96S53	571 aa		28.2	■■■□□ 2.1
SHKBP1-222	ENST00000600320	IQSEC2	Q5JU85	1478 aa		28.19	■■■□□ 2.1
SHKBP1-222	ENST00000600320	SBNO2	Q9Y2G9	1366 aa		28.18	■■■□□ 2.1
SHKBP1-222	ENST00000600320	CDC42BPG	Q6DT37	1551 aa		28.18	■■■□□ 2.1
SHKBP1-222	ENST00000600320	TULP4	Q9NRJ4	1543 aa		28.16	■■■□□ 2.1
SHKBP1-222	ENST00000600320	DCC	P43146	1447 aa		28.15	■■■□□ 2.1
SHKBP1-222	ENST00000600320	WASL	O00401	505 aa	Predicted RBP	28.13	■■■□□ 2.09
SHKBP1-222	ENST00000600320	FMN2	Q9NZ56	1722 aa		28.12	■■■□□ 2.09
SHKBP1-222	ENST00000600320	ATF3	P18847	181 aa		28.11	■■■□□ 2.09
SHKBP1-222	ENST00000600320	CDK19	Q9BWU1	502 aa		28.11	■■■□□ 2.09
SHKBP1-222	ENST00000600320	CADPS2	Q86UW7	1296 aa		28.1	■■■□□ 2.09
SHKBP1-222	ENST00000600320	MST1R	Q04912	1400 aa		28.09	■■■□□ 2.09
SHKBP1-222	ENST00000600320	NUTM2F	A1L443	756 aa		28.09	■■■□□ 2.09
SHKBP1-222	ENST00000600320	EVC2	Q86UK5	1308 aa		28.08	■■■□□ 2.09
SHKBP1-222	ENST00000600320	DISP3	Q9P2K9	1392 aa		28.08	■■■□□ 2.09
SHKBP1-222	ENST00000600320	PRR36	Q9H6K5	1346 aa		28.07	■■■□□ 2.08
SHKBP1-222	ENST00000600320	USP32	Q8NFA0	1604 aa		28.07	■■■□□ 2.08
SHKBP1-222	ENST00000600320	CABP2	Q9NPB3	220 aa		28.06	■■■□□ 2.08
SHKBP1-222	ENST00000600320	C1orf167	Q5SNV9	1468 aa		28.04	■■■□□ 2.08
SHKBP1-222	ENST00000600320	UBAP1L	F5GYI3	381 aa		28.04	■■■□□ 2.08
SHKBP1-222	ENST00000600320	SRPK2	P78362	688 aa	Known RBP	28.04	■■■□□ 2.08
SHKBP1-222	ENST00000600320	TMF1	P82094	1093 aa		28.03	■■■□□ 2.08
SHKBP1-222	ENST00000600320	ATP7B	P35670	1465 aa		28.02	■■■□□ 2.08
SHKBP1-222	ENST00000600320	ANKAR	Q7Z5J8	1434 aa		28.02	■■■□□ 2.08
SHKBP1-222	ENST00000600320	SLAIN2	Q9P270	581 aa		28.02	■■■□□ 2.08
SHKBP1-222	ENST00000600320	RGPD8	O14715	1765 aa	Predicted RBP	28.01	■■■□□ 2.08
SHKBP1-222	ENST00000600320	C11orf95	C9JLR9	678 aa	Predicted RBP	28.01	■■■□□ 2.07
SHKBP1-222	ENST00000600320	TOM1	O60784	492 aa		28.01	■■■□□ 2.07
SHKBP1-222	ENST00000600320	NUDT16	Q96DE0	195 aa	Known RBP	28	■■■□□ 2.07
SHKBP1-222	ENST00000600320	SLC24A1	O60721	1099 aa		27.99	■■■□□ 2.07
SHKBP1-222	ENST00000600320	ORAI2	Q96SN7	254 aa		27.98	■■■□□ 2.07
SHKBP1-222	ENST00000600320	TOPAZ1	Q8N9V7	1692 aa		27.96	■■■□□ 2.07
SHKBP1-222	ENST00000600320	PIP4K2B	P78356	416 aa		27.94	■■■□□ 2.06
SHKBP1-222	ENST00000600320	ESCO1	Q5FWF5	840 aa		27.94	■■■□□ 2.06
SHKBP1-222	ENST00000600320	PUS7	Q96PZ0	661 aa	Known RBP	27.94	■■■□□ 2.06
SHKBP1-222	ENST00000600320	BRINP3	Q76B58	766 aa		27.93	■■■□□ 2.06
SHKBP1-222	ENST00000600320	CCDC61	Q9Y6R9	512 aa		27.93	■■■□□ 2.06
SHKBP1-222	ENST00000600320	ATAD2	Q6PL18	1390 aa		27.93	■■■□□ 2.06
SHKBP1-222	ENST00000600320	ROBO1	Q9Y6N7	1651 aa		27.91	■■■□□ 2.06
SHKBP1-222	ENST00000600320	PPIP5K1	Q6PFW1	1433 aa		27.91	■■■□□ 2.06
SHKBP1-222	ENST00000600320	ITSN1	Q15811	1721 aa		27.9	■■■□□ 2.06
SHKBP1-222	ENST00000600320	CDCA8	Q53HL2	280 aa		27.9	■■■□□ 2.06
SHKBP1-222	ENST00000600320	PMFBP1	Q8TBY8	1022 aa		27.9	■■■□□ 2.06
SHKBP1-222	ENST00000600320	PHF8	Q9UPP1	1060 aa		27.9	■■■□□ 2.06
SHKBP1-222	ENST00000600320	KIF7	Q2M1P5	1343 aa		27.9	■■■□□ 2.06
SHKBP1-222	ENST00000600320	POLR3GL	Q9BT43	218 aa		27.89	■■■□□ 2.06
SHKBP1-222	ENST00000600320	SCAF1	Q9H7N4	1312 aa	Known RBP	27.89	■■■□□ 2.05
SHKBP1-222	ENST00000600320	CABP1	Q9NZU7	370 aa		27.88	■■■□□ 2.05
SHKBP1-222	ENST00000600320	PLEKHG3	A1L390	1219 aa		27.87	■■■□□ 2.05
SHKBP1-222	ENST00000600320	CCDC7	Q96M83	1385 aa		27.86	■■■□□ 2.05
SHKBP1-222	ENST00000600320	SLC12A5	Q9H2X9	1139 aa		27.86	■■■□□ 2.05
SHKBP1-222	ENST00000600320	KIF1A	Q12756	1690 aa		27.86	■■■□□ 2.05
SHKBP1-222	ENST00000600320	WASHC2A	Q641Q2	1341 aa		27.86	■■■□□ 2.05
SHKBP1-222	ENST00000600320	TMC1	Q8TDI8	760 aa		27.85	■■■□□ 2.05
SHKBP1-222	ENST00000600320	DDX17	Q92841	729 aa	Known RBP	27.85	■■■□□ 2.05
SHKBP1-222	ENST00000600320	MYOM1	P52179	1685 aa		27.84	■■■□□ 2.05
SHKBP1-222	ENST00000600320	FOXO3	O43524	673 aa		27.82	■■■□□ 2.04
SHKBP1-222	ENST00000600320	ACE	P12821	1306 aa		27.81	■■■□□ 2.04
SHKBP1-222	ENST00000600320	POLR3A	O14802	1390 aa	Predicted RBP	27.81	■■■□□ 2.04
SHKBP1-222	ENST00000600320	CD163L1	Q9NR16	1453 aa		27.81	■■■□□ 2.04
SHKBP1-222	ENST00000600320	NHSL1	Q5SYE7	1610 aa		27.81	■■■□□ 2.04
SHKBP1-222	ENST00000600320	NGDN	Q8NEJ9	315 aa	Known RBP	27.8	■■■□□ 2.04
SHKBP1-222	ENST00000600320	NINL	Q9Y2I6	1382 aa		27.79	■■■□□ 2.04
SHKBP1-222	ENST00000600320	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.78	■■■□□ 2.04
SHKBP1-222	ENST00000600320	XPC	Q01831	940 aa	Predicted RBP	27.78	■■■□□ 2.04
SHKBP1-222	ENST00000600320	CPSF1	Q10570	1443 aa	Known RBP	27.76	■■■□□ 2.04
SHKBP1-222	ENST00000600320	AKAP12	Q02952	1782 aa		27.76	■■■□□ 2.03
SHKBP1-222	ENST00000600320	NPHP3	Q7Z494	1330 aa		27.75	■■■□□ 2.03
SHKBP1-222	ENST00000600320	PXDN	Q92626	1479 aa		27.75	■■■□□ 2.03
SHKBP1-222	ENST00000600320		A0A1W2PP64	1363 aa		27.74	■■■□□ 2.03
SHKBP1-222	ENST00000600320	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.74	■■■□□ 2.03
SHKBP1-222	ENST00000600320	SOS2	Q07890	1332 aa	Predicted RBP	27.73	■■■□□ 2.03
SHKBP1-222	ENST00000600320	KRT28	Q7Z3Y7	464 aa		27.73	■■■□□ 2.03
SHKBP1-222	ENST00000600320	ANKRD36B	Q8N2N9	1353 aa		27.73	■■■□□ 2.03
SHKBP1-222	ENST00000600320	PSME1	Q06323	249 aa		27.72	■■■□□ 2.03
SHKBP1-222	ENST00000600320	USP6	P35125	1406 aa		27.72	■■■□□ 2.03
SHKBP1-222	ENST00000600320	PHLPP1	O60346	1717 aa		27.72	■■■□□ 2.03
SHKBP1-222	ENST00000600320	MON2	Q7Z3U7	1717 aa		27.7	■■■□□ 2.03
SHKBP1-222	ENST00000600320	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	27.7	■■■□□ 2.02
SHKBP1-222	ENST00000600320	TERF2IP	Q9NYB0	399 aa		27.7	■■■□□ 2.02
SHKBP1-222	ENST00000600320	COL16A1	Q07092	1604 aa	Predicted RBP	27.7	■■■□□ 2.02
SHKBP1-222	ENST00000600320	TRPM3	Q9HCF6	1732 aa	Predicted RBP	27.7	■■■□□ 2.02
SHKBP1-222	ENST00000600320	HSPA1L	P34931	641 aa		27.69	■■■□□ 2.02
SHKBP1-222	ENST00000600320	KTN1	Q86UP2	1357 aa	Known RBP	27.69	■■■□□ 2.02
SHKBP1-222	ENST00000600320	SSH2	Q76I76	1423 aa		27.68	■■■□□ 2.02
SHKBP1-222	ENST00000600320	ZNF692	Q9BU19	519 aa	Predicted RBP	27.68	■■■□□ 2.02
SHKBP1-222	ENST00000600320	CARD14	Q9BXL6	1004 aa		27.67	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms