RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 C1orf167Q5SNV9 1468 aa23.47■■□□□ 1.35
TRIM28-213ENST00000598355 KDM2AQ9Y2K7 1162 aa23.46■■□□□ 1.35
TRIM28-213ENST00000598355 STK26Q9P289 416 aa23.45■■□□□ 1.34
TRIM28-213ENST00000598355 BRINP3Q76B58 766 aa23.44■■□□□ 1.34
TRIM28-213ENST00000598355 SHPRHQ149N8 1683 aa23.44■■□□□ 1.34
TRIM28-213ENST00000598355 TRPM1Q7Z4N2 1603 aa23.44■■□□□ 1.34
TRIM28-213ENST00000598355 WAPLQ7Z5K2 1190 aa23.42■■□□□ 1.34
TRIM28-213ENST00000598355 SIN3AQ96ST3 1273 aa23.42■■□□□ 1.34
TRIM28-213ENST00000598355 RGPD8O14715 1765 aaPredicted RBP23.39■■□□□ 1.33
TRIM28-213ENST00000598355 L3MBTL2Q969R5 705 aa23.38■■□□□ 1.33
TRIM28-213ENST00000598355 KIF1AQ12756 1690 aa23.37■■□□□ 1.33
TRIM28-213ENST00000598355 USP32Q8NFA0 1604 aa23.37■■□□□ 1.33
TRIM28-213ENST00000598355 PRAM1Q96QH2 718 aa23.35■■□□□ 1.33
TRIM28-213ENST00000598355 JCADQ9P266 1359 aa23.34■■□□□ 1.33
TRIM28-213ENST00000598355 TRAK1Q9UPV9 953 aa23.31■■□□□ 1.32
TRIM28-213ENST00000598355 DISP3Q9P2K9 1392 aa23.3■■□□□ 1.32
TRIM28-213ENST00000598355 ANKARQ7Z5J8 1434 aa23.3■■□□□ 1.32
TRIM28-213ENST00000598355 NEUROD1Q13562 356 aa23.29■■□□□ 1.32
TRIM28-213ENST00000598355 ORAI2Q96SN7 254 aa23.29■■□□□ 1.32
TRIM28-213ENST00000598355 TULP4Q9NRJ4 1543 aa23.28■■□□□ 1.32
TRIM28-213ENST00000598355 NBPF1Q3BBV0 1214 aa23.28■■□□□ 1.32
TRIM28-213ENST00000598355 PXDNQ92626 1479 aa23.28■■□□□ 1.32
TRIM28-213ENST00000598355 QRICH2Q9H0J4 1663 aa23.28■■□□□ 1.32
TRIM28-213ENST00000598355 ITSN1Q15811 1721 aa23.27■■□□□ 1.32
TRIM28-213ENST00000598355 SOS2Q07890 1332 aaPredicted RBP23.27■■□□□ 1.32
TRIM28-213ENST00000598355 GPRASP1Q5JY77 1395 aa23.27■■□□□ 1.31
TRIM28-213ENST00000598355 COL22A1Q8NFW1 1626 aaPredicted RBP23.26■■□□□ 1.31
TRIM28-213ENST00000598355 POGKQ9P215 609 aa23.26■■□□□ 1.31
TRIM28-213ENST00000598355 LRP6O75581 1613 aa23.26■■□□□ 1.31
TRIM28-213ENST00000598355 TOPAZ1Q8N9V7 1692 aa23.25■■□□□ 1.31
TRIM28-213ENST00000598355 SAFB2Q14151 953 aaKnown RBP eCLIP23.24■■□□□ 1.31
TRIM28-213ENST00000598355 TONSLQ96HA7 1378 aa23.24■■□□□ 1.31
TRIM28-213ENST00000598355 RALGAPBQ86X10 1494 aa23.24■■□□□ 1.31
TRIM28-213ENST00000598355 DDX17Q92841 729 aaKnown RBP23.23■■□□□ 1.31
TRIM28-213ENST00000598355 SPATA31A6Q5VVP1 1343 aa23.23■■□□□ 1.31
TRIM28-213ENST00000598355 EIF3AQ14152 1382 aaKnown RBP23.23■■□□□ 1.31
TRIM28-213ENST00000598355 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
TRIM28-213ENST00000598355 PNPLA6Q8IY17 1366 aa23.22■■□□□ 1.31
TRIM28-213ENST00000598355 ATP7BP35670 1465 aa23.22■■□□□ 1.31
TRIM28-213ENST00000598355 NPHP3Q7Z494 1330 aa23.21■■□□□ 1.31
TRIM28-213ENST00000598355 CLSPNQ9HAW4 1339 aa23.21■■□□□ 1.31
TRIM28-213ENST00000598355 MINK1Q8N4C8 1332 aaPredicted RBP23.2■■□□□ 1.3
TRIM28-213ENST00000598355 NBPF8Q3BBV2 869 aa23.2■■□□□ 1.3
TRIM28-213ENST00000598355 ESCO1Q5FWF5 840 aa23.2■■□□□ 1.3
TRIM28-213ENST00000598355 LRRC59Q96AG4 307 aaKnown RBP23.19■■□□□ 1.3
TRIM28-213ENST00000598355 TRPM3Q9HCF6 1732 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-213ENST00000598355 ROCK2O75116 1388 aaKnown RBP23.18■■□□□ 1.3
TRIM28-213ENST00000598355 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
TRIM28-213ENST00000598355 WASLO00401 505 aaPredicted RBP23.18■■□□□ 1.3
TRIM28-213ENST00000598355 PRR36Q9H6K5 1346 aa23.17■■□□□ 1.3
TRIM28-213ENST00000598355 HIRIP3Q9BW71 556 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-213ENST00000598355 CENPJQ9HC77 1338 aaPredicted RBP23.14■■□□□ 1.3
TRIM28-213ENST00000598355 MARF1Q9Y4F3 1742 aaKnown RBP23.14■■□□□ 1.3
TRIM28-213ENST00000598355 ALS2Q96Q42 1657 aa23.13■■□□□ 1.29
TRIM28-213ENST00000598355 FOXO3O43524 673 aa23.13■■□□□ 1.29
TRIM28-213ENST00000598355 PHF8Q9UPP1 1060 aa23.13■■□□□ 1.29
TRIM28-213ENST00000598355 ABCA3Q99758 1704 aa23.13■■□□□ 1.29
TRIM28-213ENST00000598355 RGS17Q9UGC6 210 aaPredicted RBP23.11■■□□□ 1.29
TRIM28-213ENST00000598355 ILDR2Q71H61 639 aa23.1■■□□□ 1.29
TRIM28-213ENST00000598355 SBNO2Q9Y2G9 1366 aa23.1■■□□□ 1.29
TRIM28-213ENST00000598355 TNS3Q68CZ2 1445 aa23.08■■□□□ 1.29
TRIM28-213ENST00000598355 PHF23Q9BUL5 403 aaPredicted RBP23.08■■□□□ 1.29
TRIM28-213ENST00000598355 SBNO1A3KN83 1393 aa23.08■■□□□ 1.29
TRIM28-213ENST00000598355 CRYBG1Q9Y4K1 1723 aa23.08■■□□□ 1.28
TRIM28-213ENST00000598355 SPATA31A3Q5VYP0 1347 aa23.08■■□□□ 1.28
TRIM28-213ENST00000598355 XPCQ01831 940 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-213ENST00000598355 CDK19Q9BWU1 502 aa23.05■■□□□ 1.28
TRIM28-213ENST00000598355 TIMELESSQ9UNS1 1208 aa23.05■■□□□ 1.28
TRIM28-213ENST00000598355 POLR3AO14802 1390 aaPredicted RBP23.04■■□□□ 1.28
TRIM28-213ENST00000598355 NUDT16Q96DE0 195 aaKnown RBP23.04■■□□□ 1.28
TRIM28-213ENST00000598355 KRT28Q7Z3Y7 464 aa23.03■■□□□ 1.28
TRIM28-213ENST00000598355 PMFBP1Q8TBY8 1022 aa23.02■■□□□ 1.28
TRIM28-213ENST00000598355 CARD11Q9BXL7 1154 aa23.01■■□□□ 1.27
TRIM28-213ENST00000598355 CCDC61Q9Y6R9 512 aa23■■□□□ 1.27
TRIM28-213ENST00000598355 ARHGEF10O15013 1369 aa23■■□□□ 1.27
TRIM28-213ENST00000598355 AKAP12Q02952 1782 aa22.99■■□□□ 1.27
TRIM28-213ENST00000598355 PSME1Q06323 249 aa22.99■■□□□ 1.27
TRIM28-213ENST00000598355 PLEKHG3A1L390 1219 aa22.98■■□□□ 1.27
TRIM28-213ENST00000598355 NUTM2BA6NNL0 878 aaPredicted RBP22.98■■□□□ 1.27
TRIM28-213ENST00000598355 NUTM2EB1AL46 878 aaPredicted RBP22.98■■□□□ 1.27
TRIM28-213ENST00000598355 NUTM2AQ8IVF1 878 aaPredicted RBP22.98■■□□□ 1.27
TRIM28-213ENST00000598355 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.98■■□□□ 1.27
TRIM28-213ENST00000598355 PPIP5K1Q6PFW1 1433 aa22.98■■□□□ 1.27
TRIM28-213ENST00000598355 MEX3CQ5U5Q3 659 aaKnown RBP22.96■■□□□ 1.27
TRIM28-213ENST00000598355 POTEAQ6S8J7 498 aa22.96■■□□□ 1.27
TRIM28-213ENST00000598355 EVC2Q86UK5 1308 aa22.96■■□□□ 1.27
TRIM28-213ENST00000598355 PHRF1Q9P1Y6 1649 aaKnown RBP22.95■■□□□ 1.26
TRIM28-213ENST00000598355 NRKQ7Z2Y5 1582 aa22.94■■□□□ 1.26
TRIM28-213ENST00000598355 SRPK2P78362 688 aaKnown RBP22.94■■□□□ 1.26
TRIM28-213ENST00000598355 CABP2Q9NPB3 220 aa22.94■■□□□ 1.26
TRIM28-213ENST00000598355 NGDNQ8NEJ9 315 aaKnown RBP22.93■■□□□ 1.26
TRIM28-213ENST00000598355 MON2Q7Z3U7 1717 aa22.93■■□□□ 1.26
TRIM28-213ENST00000598355 NWD2Q9ULI1 1742 aa22.93■■□□□ 1.26
TRIM28-213ENST00000598355 PLCH1Q4KWH8 1693 aa22.93■■□□□ 1.26
TRIM28-213ENST00000598355 ACEP12821 1306 aa22.92■■□□□ 1.26
TRIM28-213ENST00000598355 AFF2P51816 1311 aa22.92■■□□□ 1.26
TRIM28-213ENST00000598355 ATAD2Q6PL18 1390 aa22.91■■□□□ 1.26
TRIM28-213ENST00000598355 ZNF772Q68DY9 489 aaPredicted RBP22.91■■□□□ 1.26
TRIM28-213ENST00000598355 BRD4O60885 1362 aaPredicted RBP22.9■■□□□ 1.26
TRIM28-213ENST00000598355 CCER1Q8TC90 406 aaPredicted RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms