RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 NRXN1Q9ULB1 1477 aa22.04■■□□□ 1.12
LIG1-215ENST00000597901 PLEKHH1Q9ULM0 1364 aa22.04■■□□□ 1.12
LIG1-215ENST00000597901 NUTM2BA6NNL0 878 aaPredicted RBP22.04■■□□□ 1.12
LIG1-215ENST00000597901 NUTM2EB1AL46 878 aaPredicted RBP22.04■■□□□ 1.12
LIG1-215ENST00000597901 NUTM2AQ8IVF1 878 aaPredicted RBP22.04■■□□□ 1.12
LIG1-215ENST00000597901 STAC3Q96MF2 364 aa22.04■■□□□ 1.12
LIG1-215ENST00000597901 ESCO1Q5FWF5 840 aa22.03■■□□□ 1.12
LIG1-215ENST00000597901 NALCNQ8IZF0 1738 aa22.03■■□□□ 1.12
LIG1-215ENST00000597901 IFT172Q9UG01 1749 aa22.03■■□□□ 1.12
LIG1-215ENST00000597901 MYOM2P54296 1465 aa22.02■■□□□ 1.12
LIG1-215ENST00000597901 NUTM2FA1L443 756 aa22.01■■□□□ 1.11
LIG1-215ENST00000597901 SOS2Q07890 1332 aaPredicted RBP22■■□□□ 1.11
LIG1-215ENST00000597901 PRAM1Q96QH2 718 aa21.98■■□□□ 1.11
LIG1-215ENST00000597901 LRP6O75581 1613 aa21.97■■□□□ 1.11
LIG1-215ENST00000597901 FOXO3O43524 673 aa21.96■■□□□ 1.11
LIG1-215ENST00000597901 SAFB2Q14151 953 aaKnown RBP eCLIP21.96■■□□□ 1.11
LIG1-215ENST00000597901 POGKQ9P215 609 aa21.96■■□□□ 1.11
LIG1-215ENST00000597901 ZNF772Q68DY9 489 aaPredicted RBP21.95■■□□□ 1.1
LIG1-215ENST00000597901 TRAK1Q9UPV9 953 aa21.95■■□□□ 1.1
LIG1-215ENST00000597901 PNPLA6Q8IY17 1366 aa21.94■■□□□ 1.1
LIG1-215ENST00000597901 NHSL1Q5SYE7 1610 aa21.93■■□□□ 1.1
LIG1-215ENST00000597901 NPHP3Q7Z494 1330 aa21.93■■□□□ 1.1
LIG1-215ENST00000597901 CDC42BPGQ6DT37 1551 aa21.91■■□□□ 1.1
LIG1-215ENST00000597901 XPCQ01831 940 aaPredicted RBP21.91■■□□□ 1.1
LIG1-215ENST00000597901 SHPRHQ149N8 1683 aa21.91■■□□□ 1.1
LIG1-215ENST00000597901 ADAMTS2O95450 1211 aa21.88■■□□□ 1.09
LIG1-215ENST00000597901 AFF2P51816 1311 aa21.87■■□□□ 1.09
LIG1-215ENST00000597901 KNDC1Q76NI1 1749 aa21.87■■□□□ 1.09
LIG1-215ENST00000597901 C8orf37Q96NL8 207 aa21.87■■□□□ 1.09
LIG1-215ENST00000597901 PHF8Q9UPP1 1060 aa21.87■■□□□ 1.09
LIG1-215ENST00000597901 KRT28Q7Z3Y7 464 aa21.86■■□□□ 1.09
LIG1-215ENST00000597901 NGLY1Q96IV0 654 aa21.86■■□□□ 1.09
LIG1-215ENST00000597901 ADGRB1O14514 1584 aa21.86■■□□□ 1.09
LIG1-215ENST00000597901 LAMC1P11047 1609 aa21.85■■□□□ 1.09
LIG1-215ENST00000597901 HIRIP3Q9BW71 556 aaPredicted RBP21.85■■□□□ 1.09
LIG1-215ENST00000597901 DLC1Q96QB1 1528 aa21.85■■□□□ 1.09
LIG1-215ENST00000597901 RXRBP28702 533 aa21.84■■□□□ 1.09
LIG1-215ENST00000597901 MINK1Q8N4C8 1332 aaPredicted RBP21.83■■□□□ 1.09
LIG1-215ENST00000597901 SIN3AQ96ST3 1273 aa21.83■■□□□ 1.09
LIG1-215ENST00000597901 QTRT2Q9H974 415 aaKnown RBP21.82■■□□□ 1.08
LIG1-215ENST00000597901 PXDNQ92626 1479 aa21.82■■□□□ 1.08
LIG1-215ENST00000597901 WASLO00401 505 aaPredicted RBP21.81■■□□□ 1.08
LIG1-215ENST00000597901 PSME1Q06323 249 aa21.81■■□□□ 1.08
LIG1-215ENST00000597901 NBPF1Q3BBV0 1214 aa21.81■■□□□ 1.08
LIG1-215ENST00000597901 SPATA31A3Q5VYP0 1347 aa21.8■■□□□ 1.08
LIG1-215ENST00000597901 PMFBP1Q8TBY8 1022 aa21.8■■□□□ 1.08
LIG1-215ENST00000597901 L3MBTL2Q969R5 705 aa21.8■■□□□ 1.08
LIG1-215ENST00000597901 NEUROD1Q13562 356 aa21.78■■□□□ 1.08
LIG1-215ENST00000597901 FMN2Q9NZ56 1722 aa21.77■■□□□ 1.08
LIG1-215ENST00000597901 FNBP4Q8N3X1 1017 aaPredicted RBP21.77■■□□□ 1.08
LIG1-215ENST00000597901 USP21Q9UK80 565 aa21.76■■□□□ 1.07
LIG1-215ENST00000597901 PRR36Q9H6K5 1346 aa21.76■■□□□ 1.07
LIG1-215ENST00000597901 RBM6P78332 1123 aaKnown RBP21.75■■□□□ 1.07
LIG1-215ENST00000597901 ANKARQ7Z5J8 1434 aa21.74■■□□□ 1.07
LIG1-215ENST00000597901 LMOD2Q6P5Q4 547 aa21.72■■□□□ 1.07
LIG1-215ENST00000597901 NUDT16Q96DE0 195 aaKnown RBP21.72■■□□□ 1.07
LIG1-215ENST00000597901 CDK19Q9BWU1 502 aa21.72■■□□□ 1.07
LIG1-215ENST00000597901 EIF3AQ14152 1382 aaKnown RBP21.72■■□□□ 1.07
LIG1-215ENST00000597901 TRIM26Q12899 539 aaPredicted RBP21.71■■□□□ 1.07
LIG1-215ENST00000597901 SBNO1A3KN83 1393 aa21.71■■□□□ 1.07
LIG1-215ENST00000597901 CABLES1Q8TDN4 633 aa21.7■■□□□ 1.06
LIG1-215ENST00000597901 TRPC5Q9UL62 973 aaPredicted RBP21.7■■□□□ 1.06
LIG1-215ENST00000597901 PLEKHG5O94827 1062 aa21.69■■□□□ 1.06
LIG1-215ENST00000597901 NGDNQ8NEJ9 315 aaKnown RBP21.69■■□□□ 1.06
LIG1-215ENST00000597901 CDK12Q9NYV4 1490 aaPredicted RBP21.69■■□□□ 1.06
LIG1-215ENST00000597901 COL22A1Q8NFW1 1626 aaPredicted RBP21.69■■□□□ 1.06
LIG1-215ENST00000597901 ADGRB2O60241 1585 aa21.68■■□□□ 1.06
LIG1-215ENST00000597901 KIF1AQ12756 1690 aa21.68■■□□□ 1.06
LIG1-215ENST00000597901 GPRASP1Q5JY77 1395 aa21.67■■□□□ 1.06
LIG1-215ENST00000597901 HAP1P54257 671 aaPredicted RBP21.67■■□□□ 1.06
LIG1-215ENST00000597901 TNS3Q68CZ2 1445 aa21.66■■□□□ 1.06
LIG1-215ENST00000597901 RGPD8O14715 1765 aaPredicted RBP21.66■■□□□ 1.06
LIG1-215ENST00000597901 CCDC61Q9Y6R9 512 aa21.65■■□□□ 1.06
LIG1-215ENST00000597901 USP32Q8NFA0 1604 aa21.65■■□□□ 1.06
LIG1-215ENST00000597901 UPF1Q92900 1129 aaKnown RBP eCLIP21.64■■□□□ 1.05
LIG1-215ENST00000597901 TULP4Q9NRJ4 1543 aa21.64■■□□□ 1.05
LIG1-215ENST00000597901 BCL9LQ86UU0 1499 aa21.64■■□□□ 1.05
LIG1-215ENST00000597901 ARHGEF10O15013 1369 aa21.63■■□□□ 1.05
LIG1-215ENST00000597901 CENPJQ9HC77 1338 aaPredicted RBP21.63■■□□□ 1.05
LIG1-215ENST00000597901 UNC5CLQ8IV45 518 aa21.63■■□□□ 1.05
LIG1-215ENST00000597901 PAK3O75914 559 aaPredicted RBP21.62■■□□□ 1.05
LIG1-215ENST00000597901 KIAA1210Q9ULL0 1709 aa21.61■■□□□ 1.05
LIG1-215ENST00000597901 PLEKHG3A1L390 1219 aa21.61■■□□□ 1.05
LIG1-215ENST00000597901 GJD4Q96KN9 370 aaPredicted RBP21.61■■□□□ 1.05
LIG1-215ENST00000597901 ATRNO75882 1429 aa21.61■■□□□ 1.05
LIG1-215ENST00000597901 NBPF8Q3BBV2 869 aa21.6■■□□□ 1.05
LIG1-215ENST00000597901 FAM83GA6ND36 823 aa21.59■■□□□ 1.05
LIG1-215ENST00000597901 SRPK2P78362 688 aaKnown RBP21.59■■□□□ 1.05
LIG1-215ENST00000597901 ARHGEF28Q8N1W1 1705 aaKnown RBP21.59■■□□□ 1.05
LIG1-215ENST00000597901 CABP2Q9NPB3 220 aa21.59■■□□□ 1.05
LIG1-215ENST00000597901 ACEP12821 1306 aa21.58■■□□□ 1.05
LIG1-215ENST00000597901 RGS12O14924 1447 aa21.57■■□□□ 1.04
LIG1-215ENST00000597901 ATP7BP35670 1465 aa21.57■■□□□ 1.04
LIG1-215ENST00000597901 SLIT2O94813 1529 aa21.55■■□□□ 1.04
LIG1-215ENST00000597901 ROCK2O75116 1388 aaKnown RBP21.54■■□□□ 1.04
LIG1-215ENST00000597901 POLR3AO14802 1390 aaPredicted RBP21.53■■□□□ 1.04
LIG1-215ENST00000597901 VPS72Q15906 364 aa21.52■■□□□ 1.04
LIG1-215ENST00000597901 CABP1Q9NZU7 370 aa21.52■■□□□ 1.04
LIG1-215ENST00000597901 NUTM2GQ5VZR2 741 aa21.51■■□□□ 1.03
LIG1-215ENST00000597901 ATAD2Q6PL18 1390 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms