RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 TRAK1Q9UPV9 953 aa28.16■■■□□ 2.1
SHKBP1-214ENST00000597396 DCCP43146 1447 aa28.16■■■□□ 2.1
SHKBP1-214ENST00000597396 ARHGEF28Q8N1W1 1705 aaKnown RBP28.15■■■□□ 2.1
SHKBP1-214ENST00000597396 CADPS2Q86UW7 1296 aa28.15■■■□□ 2.1
SHKBP1-214ENST00000597396 NBPF1Q3BBV0 1214 aa28.14■■■□□ 2.1
SHKBP1-214ENST00000597396 SIRT1Q96EB6 747 aa28.14■■■□□ 2.1
SHKBP1-214ENST00000597396 PLEKHH1Q9ULM0 1364 aa28.13■■■□□ 2.09
SHKBP1-214ENST00000597396 POGKQ9P215 609 aa28.12■■■□□ 2.09
SHKBP1-214ENST00000597396 NBPF8Q3BBV2 869 aa28.11■■■□□ 2.09
SHKBP1-214ENST00000597396 PRAM1Q96QH2 718 aa28.11■■■□□ 2.09
SHKBP1-214ENST00000597396 ROBO1Q9Y6N7 1651 aa28.09■■■□□ 2.09
SHKBP1-214ENST00000597396 ROCK2O75116 1388 aaKnown RBP28.09■■■□□ 2.09
SHKBP1-214ENST00000597396 CDC42BPGQ6DT37 1551 aa28.08■■■□□ 2.09
SHKBP1-214ENST00000597396 SAFB2Q14151 953 aaKnown RBP eCLIP28.08■■■□□ 2.09
SHKBP1-214ENST00000597396 SLAIN2Q9P270 581 aa28.08■■■□□ 2.09
SHKBP1-214ENST00000597396 TIMELESSQ9UNS1 1208 aa28.07■■■□□ 2.08
SHKBP1-214ENST00000597396 RALGAPBQ86X10 1494 aa28.04■■■□□ 2.08
SHKBP1-214ENST00000597396 MST1RQ04912 1400 aa28.03■■■□□ 2.08
SHKBP1-214ENST00000597396 FMN2Q9NZ56 1722 aa28.02■■■□□ 2.08
SHKBP1-214ENST00000597396 ADGRB2O60241 1585 aa27.99■■■□□ 2.07
SHKBP1-214ENST00000597396 GPRASP1Q5JY77 1395 aa27.99■■■□□ 2.07
SHKBP1-214ENST00000597396 MINK1Q8N4C8 1332 aaPredicted RBP27.98■■■□□ 2.07
SHKBP1-214ENST00000597396 QRICH2Q9H0J4 1663 aa27.97■■■□□ 2.07
SHKBP1-214ENST00000597396 C1orf167Q5SNV9 1468 aa27.96■■■□□ 2.07
SHKBP1-214ENST00000597396 CARD11Q9BXL7 1154 aa27.96■■■□□ 2.07
SHKBP1-214ENST00000597396 RGPD8O14715 1765 aaPredicted RBP27.96■■■□□ 2.07
SHKBP1-214ENST00000597396 HIRIP3Q9BW71 556 aaPredicted RBP27.95■■■□□ 2.06
SHKBP1-214ENST00000597396 PHLPP1O60346 1717 aa27.95■■■□□ 2.06
SHKBP1-214ENST00000597396 EIF3AQ14152 1382 aaKnown RBP27.94■■■□□ 2.06
SHKBP1-214ENST00000597396 CENPJQ9HC77 1338 aaPredicted RBP27.93■■■□□ 2.06
SHKBP1-214ENST00000597396 NUTM2FA1L443 756 aa27.93■■■□□ 2.06
SHKBP1-214ENST00000597396 BRINP3Q76B58 766 aa27.92■■■□□ 2.06
SHKBP1-214ENST00000597396 RGS17Q9UGC6 210 aaPredicted RBP27.89■■■□□ 2.06
SHKBP1-214ENST00000597396 NHSL1Q5SYE7 1610 aa27.89■■■□□ 2.05
SHKBP1-214ENST00000597396 AHDC1Q5TGY3 1603 aaPredicted RBP27.88■■■□□ 2.05
SHKBP1-214ENST00000597396 WASLO00401 505 aaPredicted RBP27.87■■■□□ 2.05
SHKBP1-214ENST00000597396 ORAI2Q96SN7 254 aa27.87■■■□□ 2.05
SHKBP1-214ENST00000597396 ESCO1Q5FWF5 840 aa27.86■■■□□ 2.05
SHKBP1-214ENST00000597396 USP32Q8NFA0 1604 aa27.85■■■□□ 2.05
SHKBP1-214ENST00000597396 KIF1AQ12756 1690 aa27.84■■■□□ 2.05
SHKBP1-214ENST00000597396 TULP4Q9NRJ4 1543 aa27.84■■■□□ 2.05
SHKBP1-214ENST00000597396 ITSN1Q15811 1721 aa27.84■■■□□ 2.05
SHKBP1-214ENST00000597396 ANKARQ7Z5J8 1434 aa27.84■■■□□ 2.05
SHKBP1-214ENST00000597396 COL16A1Q07092 1604 aaPredicted RBP27.82■■■□□ 2.04
SHKBP1-214ENST00000597396 JCADQ9P266 1359 aa27.81■■■□□ 2.04
SHKBP1-214ENST00000597396 CDK19Q9BWU1 502 aa27.8■■■□□ 2.04
SHKBP1-214ENST00000597396 DDX17Q92841 729 aaKnown RBP27.77■■■□□ 2.04
SHKBP1-214ENST00000597396 PRR36Q9H6K5 1346 aa27.76■■■□□ 2.03
SHKBP1-214ENST00000597396 PHF8Q9UPP1 1060 aa27.76■■■□□ 2.03
SHKBP1-214ENST00000597396 ATP7BP35670 1465 aa27.76■■■□□ 2.03
SHKBP1-214ENST00000597396 EVC2Q86UK5 1308 aa27.75■■■□□ 2.03
SHKBP1-214ENST00000597396 SRPK2P78362 688 aaKnown RBP27.75■■■□□ 2.03
SHKBP1-214ENST00000597396 POTEAQ6S8J7 498 aa27.75■■■□□ 2.03
SHKBP1-214ENST00000597396 USP47Q96K76 1375 aa27.74■■■□□ 2.03
SHKBP1-214ENST00000597396 NPHP3Q7Z494 1330 aa27.74■■■□□ 2.03
SHKBP1-214ENST00000597396 NUDT16Q96DE0 195 aaKnown RBP27.74■■■□□ 2.03
SHKBP1-214ENST00000597396 TOPAZ1Q8N9V7 1692 aa27.74■■■□□ 2.03
SHKBP1-214ENST00000597396 SBNO2Q9Y2G9 1366 aa27.73■■■□□ 2.03
SHKBP1-214ENST00000597396 FOXO3O43524 673 aa27.72■■■□□ 2.03
SHKBP1-214ENST00000597396 PMFBP1Q8TBY8 1022 aa27.71■■■□□ 2.03
SHKBP1-214ENST00000597396 ST20-MTHFSA0A0A6YYL1 179 aa27.7■■■□□ 2.02
SHKBP1-214ENST00000597396 CABP2Q9NPB3 220 aa27.7■■■□□ 2.02
SHKBP1-214ENST00000597396 SHPRHQ149N8 1683 aa27.7■■■□□ 2.02
SHKBP1-214ENST00000597396 SOS2Q07890 1332 aaPredicted RBP27.68■■■□□ 2.02
SHKBP1-214ENST00000597396 XPCQ01831 940 aaPredicted RBP27.67■■■□□ 2.02
SHKBP1-214ENST00000597396 LRRC59Q96AG4 307 aaKnown RBP27.67■■■□□ 2.02
SHKBP1-214ENST00000597396 PXDNQ92626 1479 aa27.67■■■□□ 2.02
SHKBP1-214ENST00000597396 SPATA31A6Q5VVP1 1343 aa27.67■■■□□ 2.02
SHKBP1-214ENST00000597396 CCDC61Q9Y6R9 512 aa27.66■■■□□ 2.02
SHKBP1-214ENST00000597396 MEX3CQ5U5Q3 659 aaKnown RBP27.65■■■□□ 2.02
SHKBP1-214ENST00000597396 KRT28Q7Z3Y7 464 aa27.64■■■□□ 2.02
SHKBP1-214ENST00000597396 NGDNQ8NEJ9 315 aaKnown RBP27.64■■■□□ 2.02
SHKBP1-214ENST00000597396 PSME1Q06323 249 aa27.63■■■□□ 2.01
SHKBP1-214ENST00000597396 PPIP5K1Q6PFW1 1433 aa27.63■■■□□ 2.01
SHKBP1-214ENST00000597396 SLC24A1O60721 1099 aa27.62■■■□□ 2.01
SHKBP1-214ENST00000597396 LRP6O75581 1613 aa27.62■■■□□ 2.01
SHKBP1-214ENST00000597396 TESK2Q96S53 571 aa27.61■■■□□ 2.01
SHKBP1-214ENST00000597396 ATAD2Q6PL18 1390 aa27.6■■■□□ 2.01
SHKBP1-214ENST00000597396 TRPM3Q9HCF6 1732 aaPredicted RBP27.58■■■□□ 2.01
SHKBP1-214ENST00000597396 PLEKHG3A1L390 1219 aa27.58■■■□□ 2.01
SHKBP1-214ENST00000597396 EIF4G2P78344 907 aaKnown RBP eCLIP27.58■■■□□ 2.01
SHKBP1-214ENST00000597396 PNPLA6Q8IY17 1366 aa27.58■■■□□ 2.01
SHKBP1-214ENST00000597396 ACEP12821 1306 aa27.57■■■□□ 2
SHKBP1-214ENST00000597396 NUTM2BA6NNL0 878 aaPredicted RBP27.56■■■□□ 2
SHKBP1-214ENST00000597396 NUTM2EB1AL46 878 aaPredicted RBP27.56■■■□□ 2
SHKBP1-214ENST00000597396 TMF1P82094 1093 aa27.56■■■□□ 2
SHKBP1-214ENST00000597396 NUTM2AQ8IVF1 878 aaPredicted RBP27.56■■■□□ 2
SHKBP1-214ENST00000597396 POLR3AO14802 1390 aaPredicted RBP27.56■■■□□ 2
SHKBP1-214ENST00000597396 CABP1Q9NZU7 370 aa27.55■■■□□ 2
SHKBP1-214ENST00000597396 TNS3Q68CZ2 1445 aa27.55■■■□□ 2
SHKBP1-214ENST00000597396 SBNO1A3KN83 1393 aa27.54■■■□□ 2
SHKBP1-214ENST00000597396 AKAP12Q02952 1782 aa27.54■■■□□ 2
SHKBP1-214ENST00000597396 SPATA31A3Q5VYP0 1347 aa27.54■■■□□ 2
SHKBP1-214ENST00000597396 ZNF772Q68DY9 489 aaPredicted RBP27.54■■■□□ 2
SHKBP1-214ENST00000597396 COL22A1Q8NFW1 1626 aaPredicted RBP27.54■■■□□ 2
SHKBP1-214ENST00000597396 HSPA5P11021 654 aaKnown RBP27.52■■■□□ 2
SHKBP1-214ENST00000597396 LMOD2Q6P5Q4 547 aa27.51■■□□□ 1.99
SHKBP1-214ENST00000597396 PUS7Q96PZ0 661 aaKnown RBP27.51■■□□□ 1.99
SHKBP1-214ENST00000597396 ALS2Q96Q42 1657 aa27.51■■□□□ 1.99
SHKBP1-214ENST00000597396 PAK3O75914 559 aaPredicted RBP27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms