RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SIRT1Q96EB6 747 aa23.55■■□□□ 1.36
TRIM28-206ENST00000595974 PLEKHH1Q9ULM0 1364 aa23.53■■□□□ 1.36
TRIM28-206ENST00000595974 WAPLQ7Z5K2 1190 aa23.53■■□□□ 1.36
TRIM28-206ENST00000595974 FMN2Q9NZ56 1722 aa23.53■■□□□ 1.36
TRIM28-206ENST00000595974 SHPRHQ149N8 1683 aa23.52■■□□□ 1.36
TRIM28-206ENST00000595974 JCADQ9P266 1359 aa23.52■■□□□ 1.36
TRIM28-206ENST00000595974 ARHGEF28Q8N1W1 1705 aaKnown RBP23.49■■□□□ 1.35
TRIM28-206ENST00000595974 ADGRB2O60241 1585 aa23.48■■□□□ 1.35
TRIM28-206ENST00000595974 PRAM1Q96QH2 718 aa23.45■■□□□ 1.34
TRIM28-206ENST00000595974 KIF1AQ12756 1690 aa23.43■■□□□ 1.34
TRIM28-206ENST00000595974 ORAI2Q96SN7 254 aa23.42■■□□□ 1.34
TRIM28-206ENST00000595974 SIN3AQ96ST3 1273 aa23.42■■□□□ 1.34
TRIM28-206ENST00000595974 PHF23Q9BUL5 403 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-206ENST00000595974 POGKQ9P215 609 aa23.42■■□□□ 1.34
TRIM28-206ENST00000595974 TRAK1Q9UPV9 953 aa23.42■■□□□ 1.34
TRIM28-206ENST00000595974 RGPD8O14715 1765 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-206ENST00000595974 SPATA31A6Q5VVP1 1343 aa23.41■■□□□ 1.34
TRIM28-206ENST00000595974 L3MBTL2Q969R5 705 aa23.4■■□□□ 1.34
TRIM28-206ENST00000595974 SAFB2Q14151 953 aaKnown RBP eCLIP23.39■■□□□ 1.33
TRIM28-206ENST00000595974 DDX17Q92841 729 aaKnown RBP23.38■■□□□ 1.33
TRIM28-206ENST00000595974 LRRC59Q96AG4 307 aaKnown RBP23.38■■□□□ 1.33
TRIM28-206ENST00000595974 TRPM1Q7Z4N2 1603 aa23.37■■□□□ 1.33
TRIM28-206ENST00000595974 NEUROD1Q13562 356 aa23.37■■□□□ 1.33
TRIM28-206ENST00000595974 ESCO1Q5FWF5 840 aa23.37■■□□□ 1.33
TRIM28-206ENST00000595974 SOS2Q07890 1332 aaPredicted RBP23.36■■□□□ 1.33
TRIM28-206ENST00000595974 NPHP3Q7Z494 1330 aa23.36■■□□□ 1.33
TRIM28-206ENST00000595974 ILDR2Q71H61 639 aa23.36■■□□□ 1.33
TRIM28-206ENST00000595974 LRP6O75581 1613 aa23.36■■□□□ 1.33
TRIM28-206ENST00000595974 USP32Q8NFA0 1604 aa23.36■■□□□ 1.33
TRIM28-206ENST00000595974 ANKARQ7Z5J8 1434 aa23.35■■□□□ 1.33
TRIM28-206ENST00000595974 NUTM2FA1L443 756 aa23.35■■□□□ 1.33
TRIM28-206ENST00000595974 EIF3AQ14152 1382 aaKnown RBP23.34■■□□□ 1.33
TRIM28-206ENST00000595974 PNPLA6Q8IY17 1366 aa23.34■■□□□ 1.33
TRIM28-206ENST00000595974 PXDNQ92626 1479 aa23.34■■□□□ 1.33
TRIM28-206ENST00000595974 TULP4Q9NRJ4 1543 aa23.33■■□□□ 1.32
TRIM28-206ENST00000595974 MINK1Q8N4C8 1332 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-206ENST00000595974 COL22A1Q8NFW1 1626 aaPredicted RBP23.31■■□□□ 1.32
TRIM28-206ENST00000595974 NBPF1Q3BBV0 1214 aa23.31■■□□□ 1.32
TRIM28-206ENST00000595974 ITSN1Q15811 1721 aa23.3■■□□□ 1.32
TRIM28-206ENST00000595974 HIRIP3Q9BW71 556 aaPredicted RBP23.29■■□□□ 1.32
TRIM28-206ENST00000595974 TONSLQ96HA7 1378 aa23.28■■□□□ 1.32
TRIM28-206ENST00000595974 FOXO3O43524 673 aa23.28■■□□□ 1.32
TRIM28-206ENST00000595974 QRICH2Q9H0J4 1663 aa23.28■■□□□ 1.32
TRIM28-206ENST00000595974 WASLO00401 505 aaPredicted RBP23.26■■□□□ 1.31
TRIM28-206ENST00000595974 MEX3CQ5U5Q3 659 aaKnown RBP23.26■■□□□ 1.31
TRIM28-206ENST00000595974 RGS17Q9UGC6 210 aaPredicted RBP23.26■■□□□ 1.31
TRIM28-206ENST00000595974 PHF8Q9UPP1 1060 aa23.26■■□□□ 1.31
TRIM28-206ENST00000595974 ROCK2O75116 1388 aaKnown RBP23.24■■□□□ 1.31
TRIM28-206ENST00000595974 ATP7BP35670 1465 aa23.24■■□□□ 1.31
TRIM28-206ENST00000595974 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-206ENST00000595974 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-206ENST00000595974 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-206ENST00000595974 TOPAZ1Q8N9V7 1692 aa23.22■■□□□ 1.31
TRIM28-206ENST00000595974 XPCQ01831 940 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-206ENST00000595974 PRR36Q9H6K5 1346 aa23.22■■□□□ 1.31
TRIM28-206ENST00000595974 CENPJQ9HC77 1338 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-206ENST00000595974 GPRASP1Q5JY77 1395 aa23.2■■□□□ 1.3
TRIM28-206ENST00000595974 MARF1Q9Y4F3 1742 aaKnown RBP23.19■■□□□ 1.3
TRIM28-206ENST00000595974 RALGAPBQ86X10 1494 aa23.19■■□□□ 1.3
TRIM28-206ENST00000595974 KRT28Q7Z3Y7 464 aa23.19■■□□□ 1.3
TRIM28-206ENST00000595974 TRPM3Q9HCF6 1732 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-206ENST00000595974 TNS3Q68CZ2 1445 aa23.18■■□□□ 1.3
TRIM28-206ENST00000595974 SPATA31A3Q5VYP0 1347 aa23.18■■□□□ 1.3
TRIM28-206ENST00000595974 NBPF8Q3BBV2 869 aa23.18■■□□□ 1.3
TRIM28-206ENST00000595974 SBNO1A3KN83 1393 aa23.17■■□□□ 1.3
TRIM28-206ENST00000595974 PSME1Q06323 249 aa23.17■■□□□ 1.3
TRIM28-206ENST00000595974 PCGF6Q9BYE7 350 aa23.17■■□□□ 1.3
TRIM28-206ENST00000595974 SOCS7O14512 581 aa23.16■■□□□ 1.3
TRIM28-206ENST00000595974 PMFBP1Q8TBY8 1022 aa23.16■■□□□ 1.3
TRIM28-206ENST00000595974 ZNF772Q68DY9 489 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-206ENST00000595974 POTEAQ6S8J7 498 aa23.15■■□□□ 1.3
TRIM28-206ENST00000595974 CDK19Q9BWU1 502 aa23.15■■□□□ 1.3
TRIM28-206ENST00000595974 ABCA3Q99758 1704 aa23.14■■□□□ 1.3
TRIM28-206ENST00000595974 ALS2Q96Q42 1657 aa23.14■■□□□ 1.29
TRIM28-206ENST00000595974 NUDT16Q96DE0 195 aaKnown RBP23.14■■□□□ 1.29
TRIM28-206ENST00000595974 CLSPNQ9HAW4 1339 aa23.13■■□□□ 1.29
TRIM28-206ENST00000595974 ARHGEF10O15013 1369 aa23.13■■□□□ 1.29
TRIM28-206ENST00000595974 AFF2P51816 1311 aa23.11■■□□□ 1.29
TRIM28-206ENST00000595974 C8orf37Q96NL8 207 aa23.11■■□□□ 1.29
TRIM28-206ENST00000595974 ADAMTS2O95450 1211 aa23.1■■□□□ 1.29
TRIM28-206ENST00000595974 NGDNQ8NEJ9 315 aaKnown RBP23.1■■□□□ 1.29
TRIM28-206ENST00000595974 CCDC61Q9Y6R9 512 aa23.09■■□□□ 1.29
TRIM28-206ENST00000595974 SRPK2P78362 688 aaKnown RBP23.08■■□□□ 1.29
TRIM28-206ENST00000595974 CARD11Q9BXL7 1154 aa23.08■■□□□ 1.29
TRIM28-206ENST00000595974 POLR3AO14802 1390 aaPredicted RBP23.08■■□□□ 1.29
TRIM28-206ENST00000595974 SBNO2Q9Y2G9 1366 aa23.07■■□□□ 1.28
TRIM28-206ENST00000595974 NGLY1Q96IV0 654 aa23.06■■□□□ 1.28
TRIM28-206ENST00000595974 EVC2Q86UK5 1308 aa23.06■■□□□ 1.28
TRIM28-206ENST00000595974 CRYBG1Q9Y4K1 1723 aa23.05■■□□□ 1.28
TRIM28-206ENST00000595974 PPIP5K1Q6PFW1 1433 aa23.05■■□□□ 1.28
TRIM28-206ENST00000595974 PLEKHG3A1L390 1219 aa23.04■■□□□ 1.28
TRIM28-206ENST00000595974 LMOD2Q6P5Q4 547 aa23.04■■□□□ 1.28
TRIM28-206ENST00000595974 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.04■■□□□ 1.28
TRIM28-206ENST00000595974 CABP2Q9NPB3 220 aa23.03■■□□□ 1.28
TRIM28-206ENST00000595974 ACEP12821 1306 aa23.02■■□□□ 1.28
TRIM28-206ENST00000595974 CDK12Q9NYV4 1490 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-206ENST00000595974 FNBP4Q8N3X1 1017 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-206ENST00000595974 TIMELESSQ9UNS1 1208 aa23.01■■□□□ 1.27
TRIM28-206ENST00000595974 HAP1P54257 671 aaPredicted RBP23■■□□□ 1.27
TRIM28-206ENST00000595974 PLCH1Q4KWH8 1693 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms