RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LRPPRCP42704 1394 aaKnown RBP22.13■■□□□ 1.13
TRIM28-205ENST00000595028 RGS12O14924 1447 aa22.12■■□□□ 1.13
TRIM28-205ENST00000595028 CDC42BPGQ6DT37 1551 aa22.12■■□□□ 1.13
TRIM28-205ENST00000595028 YTHDC2Q9H6S0 1430 aaKnown RBP22.11■■□□□ 1.13
TRIM28-205ENST00000595028 C14orf93Q9H972 538 aaKnown RBP22.1■■□□□ 1.13
TRIM28-205ENST00000595028 ABCC11Q96J66 1382 aa22.1■■□□□ 1.13
TRIM28-205ENST00000595028 NHSL1Q5SYE7 1610 aa22.09■■□□□ 1.13
TRIM28-205ENST00000595028 TMEM132EQ6IEE7 984 aa22.08■■□□□ 1.13
TRIM28-205ENST00000595028 BRINP3Q76B58 766 aa22.08■■□□□ 1.13
TRIM28-205ENST00000595028 DHX57Q6P158 1386 aaKnown RBP22.07■■□□□ 1.12
TRIM28-205ENST00000595028 ADGRB1O14514 1584 aa22.07■■□□□ 1.12
TRIM28-205ENST00000595028 CFAP70Q5T0N1 1121 aa22.06■■□□□ 1.12
TRIM28-205ENST00000595028 STK26Q9P289 416 aa22.06■■□□□ 1.12
TRIM28-205ENST00000595028 C1orf167Q5SNV9 1468 aa22.05■■□□□ 1.12
TRIM28-205ENST00000595028 RBM6P78332 1123 aaKnown RBP22.05■■□□□ 1.12
TRIM28-205ENST00000595028 QTRT2Q9H974 415 aaKnown RBP22.05■■□□□ 1.12
TRIM28-205ENST00000595028 PLEKHH1Q9ULM0 1364 aa22.03■■□□□ 1.12
TRIM28-205ENST00000595028 DLC1Q96QB1 1528 aa22.03■■□□□ 1.12
TRIM28-205ENST00000595028 DCAF11Q8TEB1 546 aa22.03■■□□□ 1.12
TRIM28-205ENST00000595028 STAC3Q96MF2 364 aa22.02■■□□□ 1.12
TRIM28-205ENST00000595028 C8orf37Q96NL8 207 aa22.02■■□□□ 1.12
TRIM28-205ENST00000595028 FMN2Q9NZ56 1722 aa22■■□□□ 1.11
TRIM28-205ENST00000595028 WAPLQ7Z5K2 1190 aa22■■□□□ 1.11
TRIM28-205ENST00000595028 KDM2AQ9Y2K7 1162 aa22■■□□□ 1.11
TRIM28-205ENST00000595028 EP400Q96L91 3159 aa21.99■■□□□ 1.11
TRIM28-205ENST00000595028 KIAA1210Q9ULL0 1709 aa21.98■■□□□ 1.11
TRIM28-205ENST00000595028 SIRT1Q96EB6 747 aa21.97■■□□□ 1.11
TRIM28-205ENST00000595028 ATAD2Q6PL18 1390 aa21.97■■□□□ 1.11
TRIM28-205ENST00000595028 LRRC59Q96AG4 307 aaKnown RBP21.96■■□□□ 1.11
TRIM28-205ENST00000595028 ZRANB1Q9UGI0 708 aa21.96■■□□□ 1.11
TRIM28-205ENST00000595028 ADGRB2O60241 1585 aa21.95■■□□□ 1.11
TRIM28-205ENST00000595028 ARHGEF28Q8N1W1 1705 aaKnown RBP21.94■■□□□ 1.1
TRIM28-205ENST00000595028 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
TRIM28-205ENST00000595028 PNPLA6Q8IY17 1366 aa21.94■■□□□ 1.1
TRIM28-205ENST00000595028 NGLY1Q96IV0 654 aa21.93■■□□□ 1.1
TRIM28-205ENST00000595028 PRAM1Q96QH2 718 aa21.92■■□□□ 1.1
TRIM28-205ENST00000595028 ORAI2Q96SN7 254 aa21.92■■□□□ 1.1
TRIM28-205ENST00000595028 DDX17Q92841 729 aaKnown RBP21.91■■□□□ 1.1
TRIM28-205ENST00000595028 KIF1AQ12756 1690 aa21.91■■□□□ 1.1
TRIM28-205ENST00000595028 ADAMTS2O95450 1211 aa21.89■■□□□ 1.09
TRIM28-205ENST00000595028 RGPD8O14715 1765 aaPredicted RBP21.88■■□□□ 1.09
TRIM28-205ENST00000595028 SAFB2Q14151 953 aaKnown RBP eCLIP21.87■■□□□ 1.09
TRIM28-205ENST00000595028 POGKQ9P215 609 aa21.87■■□□□ 1.09
TRIM28-205ENST00000595028 TRAK1Q9UPV9 953 aa21.87■■□□□ 1.09
TRIM28-205ENST00000595028 SOS2Q07890 1332 aaPredicted RBP21.86■■□□□ 1.09
TRIM28-205ENST00000595028 PXDNQ92626 1479 aa21.86■■□□□ 1.09
TRIM28-205ENST00000595028 ESCO1Q5FWF5 840 aa21.86■■□□□ 1.09
TRIM28-205ENST00000595028 SIN3AQ96ST3 1273 aa21.86■■□□□ 1.09
TRIM28-205ENST00000595028 USP32Q8NFA0 1604 aa21.86■■□□□ 1.09
TRIM28-205ENST00000595028 NUTM2FA1L443 756 aa21.85■■□□□ 1.09
TRIM28-205ENST00000595028 USP21Q9UK80 565 aa21.84■■□□□ 1.09
TRIM28-205ENST00000595028 NPHP3Q7Z494 1330 aa21.83■■□□□ 1.09
TRIM28-205ENST00000595028 L3MBTL2Q969R5 705 aa21.83■■□□□ 1.09
TRIM28-205ENST00000595028 TRPC5Q9UL62 973 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-205ENST00000595028 COL22A1Q8NFW1 1626 aaPredicted RBP21.83■■□□□ 1.08
TRIM28-205ENST00000595028 ANKARQ7Z5J8 1434 aa21.82■■□□□ 1.08
TRIM28-205ENST00000595028 TRPM1Q7Z4N2 1603 aa21.82■■□□□ 1.08
TRIM28-205ENST00000595028 TULP4Q9NRJ4 1543 aa21.8■■□□□ 1.08
TRIM28-205ENST00000595028 ATRNO75882 1429 aa21.8■■□□□ 1.08
TRIM28-205ENST00000595028 EIF3AQ14152 1382 aaKnown RBP21.79■■□□□ 1.08
TRIM28-205ENST00000595028 NEUROD1Q13562 356 aa21.79■■□□□ 1.08
TRIM28-205ENST00000595028 CCDC125Q86Z20 511 aa21.79■■□□□ 1.08
TRIM28-205ENST00000595028 MINK1Q8N4C8 1332 aaPredicted RBP21.79■■□□□ 1.08
TRIM28-205ENST00000595028 FNBP4Q8N3X1 1017 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-205ENST00000595028 FOXO3O43524 673 aa21.77■■□□□ 1.08
TRIM28-205ENST00000595028 NBPF1Q3BBV0 1214 aa21.77■■□□□ 1.08
TRIM28-205ENST00000595028 HIRIP3Q9BW71 556 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-205ENST00000595028 ITSN1Q15811 1721 aa21.76■■□□□ 1.07
TRIM28-205ENST00000595028 XPCQ01831 940 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-205ENST00000595028 PHF8Q9UPP1 1060 aa21.74■■□□□ 1.07
TRIM28-205ENST00000595028 QRICH2Q9H0J4 1663 aa21.73■■□□□ 1.07
TRIM28-205ENST00000595028 ATP7BP35670 1465 aa21.73■■□□□ 1.07
TRIM28-205ENST00000595028 WASLO00401 505 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-205ENST00000595028 PRR36Q9H6K5 1346 aa21.73■■□□□ 1.07
TRIM28-205ENST00000595028 TOPAZ1Q8N9V7 1692 aa21.72■■□□□ 1.07
TRIM28-205ENST00000595028 MARF1Q9Y4F3 1742 aaKnown RBP21.7■■□□□ 1.06
TRIM28-205ENST00000595028 TNS3Q68CZ2 1445 aa21.7■■□□□ 1.06
TRIM28-205ENST00000595028 TRPM3Q9HCF6 1732 aaPredicted RBP21.69■■□□□ 1.06
TRIM28-205ENST00000595028 TONSLQ96HA7 1378 aa21.69■■□□□ 1.06
TRIM28-205ENST00000595028 SPATA31A3Q5VYP0 1347 aa21.68■■□□□ 1.06
TRIM28-205ENST00000595028 ROCK2O75116 1388 aaKnown RBP21.68■■□□□ 1.06
TRIM28-205ENST00000595028 BCL9LQ86UU0 1499 aa21.68■■□□□ 1.06
TRIM28-205ENST00000595028 ABCA3Q99758 1704 aa21.67■■□□□ 1.06
TRIM28-205ENST00000595028 CENPJQ9HC77 1338 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-205ENST00000595028 KRT28Q7Z3Y7 464 aa21.67■■□□□ 1.06
TRIM28-205ENST00000595028 LRP5O75197 1615 aa21.66■■□□□ 1.06
TRIM28-205ENST00000595028 SBNO1A3KN83 1393 aa21.66■■□□□ 1.06
TRIM28-205ENST00000595028 PMFBP1Q8TBY8 1022 aa21.66■■□□□ 1.06
TRIM28-205ENST00000595028 BLMP54132 1417 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-205ENST00000595028 GPRASP1Q5JY77 1395 aa21.65■■□□□ 1.06
TRIM28-205ENST00000595028 GJD4Q96KN9 370 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-205ENST00000595028 RALGAPBQ86X10 1494 aa21.64■■□□□ 1.06
TRIM28-205ENST00000595028 ALS2Q96Q42 1657 aa21.64■■□□□ 1.05
TRIM28-205ENST00000595028 NBPF8Q3BBV2 869 aa21.64■■□□□ 1.05
TRIM28-205ENST00000595028 PSME1Q06323 249 aa21.63■■□□□ 1.05
TRIM28-205ENST00000595028 DEFB132Q7Z7B7 95 aa21.63■■□□□ 1.05
TRIM28-205ENST00000595028 NUDT16Q96DE0 195 aaKnown RBP21.62■■□□□ 1.05
TRIM28-205ENST00000595028 CDK19Q9BWU1 502 aa21.62■■□□□ 1.05
TRIM28-205ENST00000595028 ARHGEF10O15013 1369 aa21.61■■□□□ 1.05
TRIM28-205ENST00000595028 BRWD3Q6RI45 1802 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms