RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	TRAK1	Q9UPV9	953 aa		13.28	□□□□□ -0.28
DNMT1-223	ENST00000591239	C1orf167	Q5SNV9	1468 aa		13.28	□□□□□ -0.28
DNMT1-223	ENST00000591239	PHLPP1	O60346	1717 aa		13.27	□□□□□ -0.28
DNMT1-223	ENST00000591239	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
DNMT1-223	ENST00000591239	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.26	□□□□□ -0.29
DNMT1-223	ENST00000591239	CDC42BPG	Q6DT37	1551 aa		13.26	□□□□□ -0.29
DNMT1-223	ENST00000591239	DLC1	Q96QB1	1528 aa		13.26	□□□□□ -0.29
DNMT1-223	ENST00000591239	POGK	Q9P215	609 aa		13.26	□□□□□ -0.29
DNMT1-223	ENST00000591239	ORAI2	Q96SN7	254 aa		13.25	□□□□□ -0.29
DNMT1-223	ENST00000591239	COL16A1	Q07092	1604 aa	Predicted RBP	13.24	□□□□□ -0.29
DNMT1-223	ENST00000591239	NUTM2F	A1L443	756 aa		13.24	□□□□□ -0.29
DNMT1-223	ENST00000591239	DDX17	Q92841	729 aa	Known RBP	13.24	□□□□□ -0.29
DNMT1-223	ENST00000591239	PCGF6	Q9BYE7	350 aa		13.24	□□□□□ -0.29
DNMT1-223	ENST00000591239	MED1	Q15648	1581 aa	Predicted RBP	13.24	□□□□□ -0.29
DNMT1-223	ENST00000591239	JCAD	Q9P266	1359 aa		13.23	□□□□□ -0.29
DNMT1-223	ENST00000591239	NBPF1	Q3BBV0	1214 aa		13.23	□□□□□ -0.29
DNMT1-223	ENST00000591239	ESCO1	Q5FWF5	840 aa		13.23	□□□□□ -0.29
DNMT1-223	ENST00000591239	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.23	□□□□□ -0.29
DNMT1-223	ENST00000591239	KIAA1210	Q9ULL0	1709 aa		13.22	□□□□□ -0.29
DNMT1-223	ENST00000591239	NHSL1	Q5SYE7	1610 aa		13.21	□□□□□ -0.29
DNMT1-223	ENST00000591239	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.2	□□□□□ -0.3
DNMT1-223	ENST00000591239	LRRC59	Q96AG4	307 aa	Known RBP	13.2	□□□□□ -0.3
DNMT1-223	ENST00000591239	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.2	□□□□□ -0.3
DNMT1-223	ENST00000591239	FMN2	Q9NZ56	1722 aa		13.19	□□□□□ -0.3
DNMT1-223	ENST00000591239	TONSL	Q96HA7	1378 aa		13.19	□□□□□ -0.3
DNMT1-223	ENST00000591239	SOS2	Q07890	1332 aa	Predicted RBP	13.18	□□□□□ -0.3
DNMT1-223	ENST00000591239	FOXO3	O43524	673 aa		13.18	□□□□□ -0.3
DNMT1-223	ENST00000591239	KCNA4	P22459	653 aa		13.18	□□□□□ -0.3
DNMT1-223	ENST00000591239	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.18	□□□□□ -0.3
DNMT1-223	ENST00000591239	SPATA31A6	Q5VVP1	1343 aa		13.17	□□□□□ -0.3
DNMT1-223	ENST00000591239	NPHP3	Q7Z494	1330 aa		13.17	□□□□□ -0.3
DNMT1-223	ENST00000591239	ADGRB2	O60241	1585 aa		13.17	□□□□□ -0.3
DNMT1-223	ENST00000591239	WASL	O00401	505 aa	Predicted RBP	13.17	□□□□□ -0.3
DNMT1-223	ENST00000591239	NBPF8	Q3BBV2	869 aa		13.17	□□□□□ -0.3
DNMT1-223	ENST00000591239	SHPRH	Q149N8	1683 aa		13.16	□□□□□ -0.3
DNMT1-223	ENST00000591239	ILDR2	Q71H61	639 aa		13.16	□□□□□ -0.3
DNMT1-223	ENST00000591239	TRPM1	Q7Z4N2	1603 aa		13.16	□□□□□ -0.3
DNMT1-223	ENST00000591239	PHF8	Q9UPP1	1060 aa		13.15	□□□□□ -0.3
DNMT1-223	ENST00000591239	ROCK2	O75116	1388 aa	Known RBP	13.15	□□□□□ -0.3
DNMT1-223	ENST00000591239	ANKAR	Q7Z5J8	1434 aa		13.14	□□□□□ -0.31
DNMT1-223	ENST00000591239	XPC	Q01831	940 aa	Predicted RBP	13.14	□□□□□ -0.31
DNMT1-223	ENST00000591239	EIF3A	Q14152	1382 aa	Known RBP	13.14	□□□□□ -0.31
DNMT1-223	ENST00000591239	PNPLA6	Q8IY17	1366 aa		13.14	□□□□□ -0.31
DNMT1-223	ENST00000591239	RGPD8	O14715	1765 aa	Predicted RBP	13.14	□□□□□ -0.31
DNMT1-223	ENST00000591239	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	PXDN	Q92626	1479 aa		13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	NUTM2E	B1AL46	878 aa	Predicted RBP	13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	LRP6	O75581	1613 aa		13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	USP32	Q8NFA0	1604 aa		13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	TULP4	Q9NRJ4	1543 aa		13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	PRR36	Q9H6K5	1346 aa		13.13	□□□□□ -0.31
DNMT1-223	ENST00000591239	KIF1A	Q12756	1690 aa		13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	MEX3C	Q5U5Q3	659 aa	Known RBP	13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	KRT28	Q7Z3Y7	464 aa		13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	PMFBP1	Q8TBY8	1022 aa		13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	CDK19	Q9BWU1	502 aa		13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	RGS17	Q9UGC6	210 aa	Predicted RBP	13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	CLSPN	Q9HAW4	1339 aa		13.12	□□□□□ -0.31
DNMT1-223	ENST00000591239	GPRASP1	Q5JY77	1395 aa		13.1	□□□□□ -0.31
DNMT1-223	ENST00000591239	PSME1	Q06323	249 aa		13.1	□□□□□ -0.31
DNMT1-223	ENST00000591239	NUDT16	Q96DE0	195 aa	Known RBP	13.1	□□□□□ -0.31
DNMT1-223	ENST00000591239	CARD11	Q9BXL7	1154 aa		13.09	□□□□□ -0.31
DNMT1-223	ENST00000591239	SPATA31A3	Q5VYP0	1347 aa		13.09	□□□□□ -0.31
DNMT1-223	ENST00000591239	ATP7B	P35670	1465 aa		13.08	□□□□□ -0.32
DNMT1-223	ENST00000591239	RALGAPB	Q86X10	1494 aa		13.08	□□□□□ -0.32
DNMT1-223	ENST00000591239	QRICH2	Q9H0J4	1663 aa		13.08	□□□□□ -0.32
DNMT1-223	ENST00000591239	SRPK2	P78362	688 aa	Known RBP	13.07	□□□□□ -0.32
DNMT1-223	ENST00000591239	NGDN	Q8NEJ9	315 aa	Known RBP	13.07	□□□□□ -0.32
DNMT1-223	ENST00000591239	CCER1	Q8TC90	406 aa	Predicted RBP	13.07	□□□□□ -0.32
DNMT1-223	ENST00000591239	CCDC61	Q9Y6R9	512 aa		13.07	□□□□□ -0.32
DNMT1-223	ENST00000591239	ADAMTS2	O95450	1211 aa		13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	POTEA	Q6S8J7	498 aa		13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	CABP2	Q9NPB3	220 aa		13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	TIMELESS	Q9UNS1	1208 aa		13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	SBNO1	A3KN83	1393 aa		13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.06	□□□□□ -0.32
DNMT1-223	ENST00000591239	TNS3	Q68CZ2	1445 aa		13.05	□□□□□ -0.32
DNMT1-223	ENST00000591239	LMOD2	Q6P5Q4	547 aa		13.05	□□□□□ -0.32
DNMT1-223	ENST00000591239	C8orf37	Q96NL8	207 aa		13.05	□□□□□ -0.32
DNMT1-223	ENST00000591239	EVC2	Q86UK5	1308 aa		13.05	□□□□□ -0.32
DNMT1-223	ENST00000591239	ITSN1	Q15811	1721 aa		13.05	□□□□□ -0.32
DNMT1-223	ENST00000591239	PLEKHG3	A1L390	1219 aa		13.04	□□□□□ -0.32
DNMT1-223	ENST00000591239	ZNF772	Q68DY9	489 aa	Predicted RBP	13.04	□□□□□ -0.32
DNMT1-223	ENST00000591239	NGLY1	Q96IV0	654 aa		13.03	□□□□□ -0.32
DNMT1-223	ENST00000591239	ACE	P12821	1306 aa		13.03	□□□□□ -0.32
DNMT1-223	ENST00000591239	AFF2	P51816	1311 aa		13.03	□□□□□ -0.32
DNMT1-223	ENST00000591239	POLR3A	O14802	1390 aa	Predicted RBP	13.03	□□□□□ -0.32
DNMT1-223	ENST00000591239	ARHGEF10	O15013	1369 aa		13.03	□□□□□ -0.32
DNMT1-223	ENST00000591239	TOPAZ1	Q8N9V7	1692 aa		13.02	□□□□□ -0.32
DNMT1-223	ENST00000591239	PAK3	O75914	559 aa	Predicted RBP	13.02	□□□□□ -0.33
DNMT1-223	ENST00000591239	PPIP5K1	Q6PFW1	1433 aa		13.02	□□□□□ -0.33
DNMT1-223	ENST00000591239	SOCS7	O14512	581 aa		13.01	□□□□□ -0.33
DNMT1-223	ENST00000591239	PPP4R3CP	Q6ZMV5	832 aa		13.01	□□□□□ -0.33
DNMT1-223	ENST00000591239	CABLES1	Q8TDN4	633 aa		13.01	□□□□□ -0.33
DNMT1-223	ENST00000591239	SBNO2	Q9Y2G9	1366 aa		13.01	□□□□□ -0.33
DNMT1-223	ENST00000591239	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.01	□□□□□ -0.33
DNMT1-223	ENST00000591239	PLEKHG5	O94827	1062 aa		13	□□□□□ -0.33
DNMT1-223	ENST00000591239	HAP1	P54257	671 aa	Predicted RBP	13	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms