RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 SLAIN2Q9P270 581 aa29.05■■■□□ 2.24
DDX39A-207ENST00000588542 TRAK1Q9UPV9 953 aa29.05■■■□□ 2.24
DDX39A-207ENST00000588542 NBPF8Q3BBV2 869 aa29.04■■■□□ 2.24
DDX39A-207ENST00000588542 CCER1Q8TC90 406 aaPredicted RBP29.03■■■□□ 2.24
DDX39A-207ENST00000588542 CDC42BPGQ6DT37 1551 aa29.02■■■□□ 2.24
DDX39A-207ENST00000588542 MST1RQ04912 1400 aa29.02■■■□□ 2.24
DDX39A-207ENST00000588542 PRAM1Q96QH2 718 aa29.01■■■□□ 2.23
DDX39A-207ENST00000588542 POGKQ9P215 609 aa28.96■■■□□ 2.23
DDX39A-207ENST00000588542 FMN2Q9NZ56 1722 aa28.96■■■□□ 2.23
DDX39A-207ENST00000588542 HSPA1LP34931 641 aa28.95■■■□□ 2.22
DDX39A-207ENST00000588542 SAFB2Q14151 953 aaKnown RBP eCLIP28.95■■■□□ 2.22
DDX39A-207ENST00000588542 ADGRB2O60241 1585 aa28.94■■■□□ 2.22
DDX39A-207ENST00000588542 C1orf167Q5SNV9 1468 aa28.92■■■□□ 2.22
DDX39A-207ENST00000588542 RALGAPBQ86X10 1494 aa28.92■■■□□ 2.22
DDX39A-207ENST00000588542 ROCK2O75116 1388 aaKnown RBP28.91■■■□□ 2.22
DDX39A-207ENST00000588542 GPRASP1Q5JY77 1395 aa28.91■■■□□ 2.22
DDX39A-207ENST00000588542 TIMELESSQ9UNS1 1208 aa28.9■■■□□ 2.22
DDX39A-207ENST00000588542 RGPD8O14715 1765 aaPredicted RBP28.9■■■□□ 2.22
DDX39A-207ENST00000588542 BRINP3Q76B58 766 aa28.89■■■□□ 2.22
DDX39A-207ENST00000588542 PHLPP1O60346 1717 aa28.89■■■□□ 2.21
DDX39A-207ENST00000588542 NHSL1Q5SYE7 1610 aa28.87■■■□□ 2.21
DDX39A-207ENST00000588542 AHDC1Q5TGY3 1603 aaPredicted RBP28.87■■■□□ 2.21
DDX39A-207ENST00000588542 MINK1Q8N4C8 1332 aaPredicted RBP28.86■■■□□ 2.21
DDX39A-207ENST00000588542 QRICH2Q9H0J4 1663 aa28.86■■■□□ 2.21
DDX39A-207ENST00000588542 HIRIP3Q9BW71 556 aaPredicted RBP28.84■■■□□ 2.21
DDX39A-207ENST00000588542 USP32Q8NFA0 1604 aa28.83■■■□□ 2.21
DDX39A-207ENST00000588542 ORAI2Q96SN7 254 aa28.83■■■□□ 2.21
DDX39A-207ENST00000588542 NUTM2FA1L443 756 aa28.82■■■□□ 2.2
DDX39A-207ENST00000588542 COL16A1Q07092 1604 aaPredicted RBP28.82■■■□□ 2.2
DDX39A-207ENST00000588542 CENPJQ9HC77 1338 aaPredicted RBP28.8■■■□□ 2.2
DDX39A-207ENST00000588542 CARD11Q9BXL7 1154 aa28.79■■■□□ 2.2
DDX39A-207ENST00000588542 WASLO00401 505 aaPredicted RBP28.77■■■□□ 2.2
DDX39A-207ENST00000588542 TULP4Q9NRJ4 1543 aa28.76■■■□□ 2.19
DDX39A-207ENST00000588542 ANKARQ7Z5J8 1434 aa28.76■■■□□ 2.19
DDX39A-207ENST00000588542 KIF1AQ12756 1690 aa28.75■■■□□ 2.19
DDX39A-207ENST00000588542 ESCO1Q5FWF5 840 aa28.75■■■□□ 2.19
DDX39A-207ENST00000588542 DDX17Q92841 729 aaKnown RBP28.75■■■□□ 2.19
DDX39A-207ENST00000588542 EIF3AQ14152 1382 aaKnown RBP28.73■■■□□ 2.19
DDX39A-207ENST00000588542 PRR36Q9H6K5 1346 aa28.71■■■□□ 2.19
DDX39A-207ENST00000588542 ITSN1Q15811 1721 aa28.7■■■□□ 2.19
DDX39A-207ENST00000588542 CDK19Q9BWU1 502 aa28.69■■■□□ 2.18
DDX39A-207ENST00000588542 ATP7BP35670 1465 aa28.69■■■□□ 2.18
DDX39A-207ENST00000588542 TOPAZ1Q8N9V7 1692 aa28.68■■■□□ 2.18
DDX39A-207ENST00000588542 SHPRHQ149N8 1683 aa28.67■■■□□ 2.18
DDX39A-207ENST00000588542 SOS2Q07890 1332 aaPredicted RBP28.66■■■□□ 2.18
DDX39A-207ENST00000588542 PXDNQ92626 1479 aa28.66■■■□□ 2.18
DDX39A-207ENST00000588542 PHF8Q9UPP1 1060 aa28.65■■■□□ 2.18
DDX39A-207ENST00000588542 FOXO3O43524 673 aa28.64■■■□□ 2.18
DDX39A-207ENST00000588542 NPHP3Q7Z494 1330 aa28.64■■■□□ 2.17
DDX39A-207ENST00000588542 SBNO2Q9Y2G9 1366 aa28.63■■■□□ 2.17
DDX39A-207ENST00000588542 NUDT16Q96DE0 195 aaKnown RBP28.63■■■□□ 2.17
DDX39A-207ENST00000588542 JCADQ9P266 1359 aa28.62■■■□□ 2.17
DDX39A-207ENST00000588542 PMFBP1Q8TBY8 1022 aa28.6■■■□□ 2.17
DDX39A-207ENST00000588542 LRRC59Q96AG4 307 aaKnown RBP28.59■■■□□ 2.17
DDX39A-207ENST00000588542 CABP2Q9NPB3 220 aa28.59■■■□□ 2.17
DDX39A-207ENST00000588542 EVC2Q86UK5 1308 aa28.59■■■□□ 2.17
DDX39A-207ENST00000588542 MED1Q15648 1581 aaPredicted RBP28.58■■■□□ 2.17
DDX39A-207ENST00000588542 XPCQ01831 940 aaPredicted RBP28.58■■■□□ 2.17
DDX39A-207ENST00000588542 USP47Q96K76 1375 aa28.58■■■□□ 2.17
DDX39A-207ENST00000588542 ST20-MTHFSA0A0A6YYL1 179 aa28.57■■■□□ 2.16
DDX39A-207ENST00000588542 SRPK2P78362 688 aaKnown RBP28.57■■■□□ 2.16
DDX39A-207ENST00000588542 CCDC61Q9Y6R9 512 aa28.55■■■□□ 2.16
DDX39A-207ENST00000588542 TRPM3Q9HCF6 1732 aaPredicted RBP28.55■■■□□ 2.16
DDX39A-207ENST00000588542 PNPLA6Q8IY17 1366 aa28.54■■■□□ 2.16
DDX39A-207ENST00000588542 KRT28Q7Z3Y7 464 aa28.54■■■□□ 2.16
DDX39A-207ENST00000588542 TESK2Q96S53 571 aa28.54■■■□□ 2.16
DDX39A-207ENST00000588542 COL22A1Q8NFW1 1626 aaPredicted RBP28.52■■■□□ 2.16
DDX39A-207ENST00000588542 PPIP5K1Q6PFW1 1433 aa28.51■■■□□ 2.15
DDX39A-207ENST00000588542 PLEKHG3A1L390 1219 aa28.5■■■□□ 2.15
DDX39A-207ENST00000588542 POLR3AO14802 1390 aaPredicted RBP28.5■■■□□ 2.15
DDX39A-207ENST00000588542 SPATA31A6Q5VVP1 1343 aa28.49■■■□□ 2.15
DDX39A-207ENST00000588542 PSME1Q06323 249 aa28.49■■■□□ 2.15
DDX39A-207ENST00000588542 LRP6O75581 1613 aa28.48■■■□□ 2.15
DDX39A-207ENST00000588542 NGDNQ8NEJ9 315 aaKnown RBP28.48■■■□□ 2.15
DDX39A-207ENST00000588542 SPATA31A3Q5VYP0 1347 aa28.47■■■□□ 2.15
DDX39A-207ENST00000588542 ALS2Q96Q42 1657 aa28.47■■■□□ 2.15
DDX39A-207ENST00000588542 SBNO1A3KN83 1393 aa28.47■■■□□ 2.15
DDX39A-207ENST00000588542 ACEP12821 1306 aa28.46■■■□□ 2.15
DDX39A-207ENST00000588542 TNS3Q68CZ2 1445 aa28.45■■■□□ 2.15
DDX39A-207ENST00000588542 CABP1Q9NZU7 370 aa28.44■■■□□ 2.14
DDX39A-207ENST00000588542 ATAD2Q6PL18 1390 aa28.44■■■□□ 2.14
DDX39A-207ENST00000588542 AKAP12Q02952 1782 aa28.44■■■□□ 2.14
DDX39A-207ENST00000588542 SLC24A1O60721 1099 aa28.41■■■□□ 2.14
DDX39A-207ENST00000588542 DISP3Q9P2K9 1392 aa28.4■■■□□ 2.14
DDX39A-207ENST00000588542 PUS7Q96PZ0 661 aaKnown RBP28.4■■■□□ 2.14
DDX39A-207ENST00000588542 NUTM2BA6NNL0 878 aaPredicted RBP28.39■■■□□ 2.14
DDX39A-207ENST00000588542 NUTM2EB1AL46 878 aaPredicted RBP28.39■■■□□ 2.14
DDX39A-207ENST00000588542 NUTM2AQ8IVF1 878 aaPredicted RBP28.39■■■□□ 2.14
DDX39A-207ENST00000588542 ABCA3Q99758 1704 aa28.39■■■□□ 2.14
DDX39A-207ENST00000588542 MARF1Q9Y4F3 1742 aaKnown RBP28.37■■■□□ 2.13
DDX39A-207ENST00000588542 HSPA5P11021 654 aaKnown RBP28.36■■■□□ 2.13
DDX39A-207ENST00000588542 EIF4G2P78344 907 aaKnown RBP eCLIP28.36■■■□□ 2.13
DDX39A-207ENST00000588542 ARHGEF10O15013 1369 aa28.36■■■□□ 2.13
DDX39A-207ENST00000588542 CRYBG1Q9Y4K1 1723 aa28.35■■■□□ 2.13
DDX39A-207ENST00000588542 TMF1P82094 1093 aa28.35■■■□□ 2.13
DDX39A-207ENST00000588542 MON2Q7Z3U7 1717 aa28.35■■■□□ 2.13
DDX39A-207ENST00000588542 CPSF1Q10570 1443 aaKnown RBP28.35■■■□□ 2.13
DDX39A-207ENST00000588542 USP6P35125 1406 aa28.34■■■□□ 2.13
DDX39A-207ENST00000588542 CD163L1Q9NR16 1453 aa28.34■■■□□ 2.13
DDX39A-207ENST00000588542 LMOD2Q6P5Q4 547 aa28.33■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms