RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SSUH2Q9Y2M2 353 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 TMEM2Q9UHN6 1383 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 ASXL1Q8IXJ9 1541 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 PTPRMP28827 1452 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 SBNO2Q9Y2G9 1366 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 NBPF1Q3BBV0 1214 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 CFAP70Q5T0N1 1121 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 THEMISQ8N1K5 641 aaPredicted RBP8.54□□□□□ -1.04
LIG3-206ENST00000586058 KIF7Q2M1P5 1343 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 WASHC2AQ641Q2 1341 aa8.54□□□□□ -1.04
LIG3-206ENST00000586058 CENPJQ9HC77 1338 aaPredicted RBP8.54□□□□□ -1.04
LIG3-206ENST00000586058 ARHGAP23Q9P227 1491 aa8.53□□□□□ -1.04
LIG3-206ENST00000586058 KIF20BQ96Q89 1820 aa8.53□□□□□ -1.04
LIG3-206ENST00000586058 C14orf93Q9H972 538 aaKnown RBP8.53□□□□□ -1.04
LIG3-206ENST00000586058 YTHDC2Q9H6S0 1430 aaKnown RBP8.53□□□□□ -1.04
LIG3-206ENST00000586058 CHD2O14647 1828 aaKnown RBP8.52□□□□□ -1.04
LIG3-206ENST00000586058 ANKRD26Q9UPS8 1709 aa8.52□□□□□ -1.05
LIG3-206ENST00000586058 PLEKHG1Q9ULL1 1385 aa8.52□□□□□ -1.05
LIG3-206ENST00000586058 HAX1O00165 279 aa8.52□□□□□ -1.05
LIG3-206ENST00000586058 CEBPAP49715 358 aaPredicted RBP8.52□□□□□ -1.05
LIG3-206ENST00000586058 NUTM2DQ5VT03 806 aaPredicted RBP8.52□□□□□ -1.05
LIG3-206ENST00000586058 ZNF692Q9BU19 519 aaPredicted RBP8.52□□□□□ -1.05
LIG3-206ENST00000586058 SPDYE1Q8NFV5 336 aaPredicted RBP8.51□□□□□ -1.05
LIG3-206ENST00000586058 XRN1Q8IZH2 1706 aaKnown RBP8.51□□□□□ -1.05
LIG3-206ENST00000586058 USP32Q8NFA0 1604 aa8.51□□□□□ -1.05
LIG3-206ENST00000586058 ADGRB2O60241 1585 aa8.5□□□□□ -1.05
LIG3-206ENST00000586058 TRAK1Q9UPV9 953 aa8.5□□□□□ -1.05
LIG3-206ENST00000586058 DISP3Q9P2K9 1392 aa8.49□□□□□ -1.05
LIG3-206ENST00000586058 POGKQ9P215 609 aa8.49□□□□□ -1.05
LIG3-206ENST00000586058 CLEC11AQ9Y240 323 aa8.49□□□□□ -1.05
LIG3-206ENST00000586058 EVC2Q86UK5 1308 aa8.49□□□□□ -1.05
LIG3-206ENST00000586058 LRPPRCP42704 1394 aaKnown RBP8.48□□□□□ -1.05
LIG3-206ENST00000586058 KTN1Q86UP2 1357 aaKnown RBP8.48□□□□□ -1.05
LIG3-206ENST00000586058 AKAP12Q02952 1782 aa8.48□□□□□ -1.05
LIG3-206ENST00000586058 TXNDC2Q86VQ3 553 aa8.48□□□□□ -1.05
LIG3-206ENST00000586058 TULP4Q9NRJ4 1543 aa8.48□□□□□ -1.05
LIG3-206ENST00000586058 NINLQ9Y2I6 1382 aa8.48□□□□□ -1.05
LIG3-206ENST00000586058 TOPAZ1Q8N9V7 1692 aa8.47□□□□□ -1.05
LIG3-206ENST00000586058 EVX2Q03828 476 aa8.47□□□□□ -1.05
LIG3-206ENST00000586058 TMEM132EQ6IEE7 984 aa8.47□□□□□ -1.05
LIG3-206ENST00000586058 MIER1Q8N108 512 aa8.47□□□□□ -1.05
LIG3-206ENST00000586058 TECPR2O15040 1411 aa8.46□□□□□ -1.05
LIG3-206ENST00000586058 FAM135BQ49AJ0 1406 aa8.46□□□□□ -1.05
LIG3-206ENST00000586058 MON2Q7Z3U7 1717 aa8.46□□□□□ -1.05
LIG3-206ENST00000586058 NALCNQ8IZF0 1738 aa8.46□□□□□ -1.05
LIG3-206ENST00000586058 PRKAR2AP13861 404 aaKnown RBP8.46□□□□□ -1.06
LIG3-206ENST00000586058 ANKLE2Q86XL3 938 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 TESK2Q96S53 571 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 STK26Q9P289 416 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 ATAD2Q6PL18 1390 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 PIK3R4Q99570 1358 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 PTCH1Q13635 1447 aa8.46□□□□□ -1.06
LIG3-206ENST00000586058 FMN2Q9NZ56 1722 aa8.45□□□□□ -1.06
LIG3-206ENST00000586058 ABCC11Q96J66 1382 aa8.45□□□□□ -1.06
LIG3-206ENST00000586058 RGPD8O14715 1765 aaPredicted RBP8.45□□□□□ -1.06
LIG3-206ENST00000586058 ADAMTS13Q76LX8 1427 aa8.45□□□□□ -1.06
LIG3-206ENST00000586058 NWD1Q149M9 1564 aa8.44□□□□□ -1.06
LIG3-206ENST00000586058 C11orf95C9JLR9 678 aaPredicted RBP8.44□□□□□ -1.06
LIG3-206ENST00000586058 CCER2I3L3R5 266 aa8.44□□□□□ -1.06
LIG3-206ENST00000586058 CENPBP07199 599 aaPredicted RBP8.44□□□□□ -1.06
LIG3-206ENST00000586058 SRPK2P78362 688 aaKnown RBP8.44□□□□□ -1.06
LIG3-206ENST00000586058 NPHP4O75161 1426 aaPredicted RBP8.44□□□□□ -1.06
LIG3-206ENST00000586058 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.43□□□□□ -1.06
LIG3-206ENST00000586058 SAFB2Q14151 953 aaKnown RBP eCLIP8.43□□□□□ -1.06
LIG3-206ENST00000586058 PRAM1Q96QH2 718 aa8.43□□□□□ -1.06
LIG3-206ENST00000586058 KNSTRNQ9Y448 316 aa8.43□□□□□ -1.06
LIG3-206ENST00000586058 MED14O60244 1454 aa8.43□□□□□ -1.06
LIG3-206ENST00000586058 CDC42BPGQ6DT37 1551 aa8.43□□□□□ -1.06
LIG3-206ENST00000586058 PUS7Q96PZ0 661 aaKnown RBP8.42□□□□□ -1.06
LIG3-206ENST00000586058 MINK1Q8N4C8 1332 aaPredicted RBP8.42□□□□□ -1.06
LIG3-206ENST00000586058 METP08581 1390 aa8.42□□□□□ -1.06
LIG3-206ENST00000586058 ATP7BP35670 1465 aa8.42□□□□□ -1.06
LIG3-206ENST00000586058 NKTRP30414 1462 aaKnown RBP8.41□□□□□ -1.06
LIG3-206ENST00000586058 TMC1Q8TDI8 760 aa8.41□□□□□ -1.06
LIG3-206ENST00000586058 TBX22Q9Y458 520 aa8.41□□□□□ -1.06
LIG3-206ENST00000586058 KIF1AQ12756 1690 aa8.4□□□□□ -1.06
LIG3-206ENST00000586058 LTKP29376 864 aa8.4□□□□□ -1.06
LIG3-206ENST00000586058 RALBP1Q15311 655 aa8.4□□□□□ -1.06
LIG3-206ENST00000586058 SIRT1Q96EB6 747 aa8.4□□□□□ -1.06
LIG3-206ENST00000586058 SLC26A8Q96RN1 970 aa8.4□□□□□ -1.06
LIG3-206ENST00000586058 PRKRIP1Q9H875 184 aaPredicted RBP8.4□□□□□ -1.06
LIG3-206ENST00000586058 STRCQ7RTU9 1775 aa8.4□□□□□ -1.07
LIG3-206ENST00000586058 NRKQ7Z2Y5 1582 aa8.39□□□□□ -1.07
LIG3-206ENST00000586058 NSD2O96028 1365 aa8.39□□□□□ -1.07
LIG3-206ENST00000586058 ANKRD36BQ8N2N9 1353 aa8.39□□□□□ -1.07
LIG3-206ENST00000586058 MYBBP1AQ9BQG0 1328 aaKnown RBP8.39□□□□□ -1.07
LIG3-206ENST00000586058 HDGFL2Q7Z4V5 671 aaPredicted RBP8.39□□□□□ -1.07
LIG3-206ENST00000586058 YTHDC1Q96MU7 727 aaKnown RBP8.39□□□□□ -1.07
LIG3-206ENST00000586058 TERF2IPQ9NYB0 399 aa8.39□□□□□ -1.07
LIG3-206ENST00000586058 NSD3Q9BZ95 1437 aa8.38□□□□□ -1.07
LIG3-206ENST00000586058 CNGB1Q14028 1251 aaPredicted RBP8.38□□□□□ -1.07
LIG3-206ENST00000586058 PANK3Q9H999 370 aa8.38□□□□□ -1.07
LIG3-206ENST00000586058 MAP2P11137 1827 aaKnown RBP8.38□□□□□ -1.07
LIG3-206ENST00000586058 LMTK3Q96Q04 1460 aa8.38□□□□□ -1.07
LIG3-206ENST00000586058 PPIP5K1Q6PFW1 1433 aa8.37□□□□□ -1.07
LIG3-206ENST00000586058 NPC1L1Q9UHC9 1359 aa8.37□□□□□ -1.07
LIG3-206ENST00000586058 CGNL1Q0VF96 1302 aa8.37□□□□□ -1.07
LIG3-206ENST00000586058 CHADLQ6NUI6 762 aa8.37□□□□□ -1.07
LIG3-206ENST00000586058 MRS2Q9HD23 443 aa8.37□□□□□ -1.07
LIG3-206ENST00000586058 AMOTL2Q9Y2J4 779 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms