RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 DACH1Q9UI36 760 aa10.3□□□□□ -0.76
SMCHD1-206ENST00000581631 DXOO77932 396 aaKnown RBP10.28□□□□□ -0.76
SMCHD1-206ENST00000581631 SMCPP49901 116 aaPredicted RBP10.28□□□□□ -0.76
SMCHD1-206ENST00000581631 Q3C1V9 767 aa10.28□□□□□ -0.76
SMCHD1-206ENST00000581631 HLA-CQ95604 372 aa10.28□□□□□ -0.76
SMCHD1-206ENST00000581631 KDM4AO75164 1064 aa10.27□□□□□ -0.77
SMCHD1-206ENST00000581631 CYP4X1Q8N118 509 aa10.27□□□□□ -0.77
SMCHD1-206ENST00000581631 WNT7AO00755 349 aa10.26□□□□□ -0.77
SMCHD1-206ENST00000581631 MINK1Q8N4C8 1332 aaPredicted RBP10.26□□□□□ -0.77
SMCHD1-206ENST00000581631 MDM2Q00987 491 aaPredicted RBP10.25□□□□□ -0.77
SMCHD1-206ENST00000581631 TRIM32Q13049 653 aa10.25□□□□□ -0.77
SMCHD1-206ENST00000581631 CTC1Q2NKJ3 1217 aa10.25□□□□□ -0.77
SMCHD1-206ENST00000581631 USB1Q9BQ65 265 aaKnown RBP10.25□□□□□ -0.77
SMCHD1-206ENST00000581631 HOXA2O43364 376 aa10.24□□□□□ -0.77
SMCHD1-206ENST00000581631 USP46P62068 366 aa10.24□□□□□ -0.77
SMCHD1-206ENST00000581631 CCDC102AQ96A19 550 aa10.24□□□□□ -0.77
SMCHD1-206ENST00000581631 ZBTB24O43167 697 aaPredicted RBP10.23□□□□□ -0.77
SMCHD1-206ENST00000581631 SMPD1P17405 629 aa10.23□□□□□ -0.77
SMCHD1-206ENST00000581631 AXIN1O15169 862 aa10.22□□□□□ -0.77
SMCHD1-206ENST00000581631 GMPR2Q9P2T1 348 aaKnown RBP10.22□□□□□ -0.77
SMCHD1-206ENST00000581631 TREML4Q6UXN2 200 aa10.21□□□□□ -0.77
SMCHD1-206ENST00000581631 FAM217BQ9NTX9 383 aaPredicted RBP10.21□□□□□ -0.77
SMCHD1-206ENST00000581631 SNIP1Q8TAD8 396 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-206ENST00000581631 MRGPRX2Q96LB1 330 aa10.2□□□□□ -0.78
SMCHD1-206ENST00000581631 SKOR1P84550 965 aa10.19□□□□□ -0.78
SMCHD1-206ENST00000581631 GUCA2AQ02747 115 aa10.19□□□□□ -0.78
SMCHD1-206ENST00000581631 VSIG10Q8N0Z9 540 aa10.19□□□□□ -0.78
SMCHD1-206ENST00000581631 GPCPD1Q9NPB8 672 aa10.19□□□□□ -0.78
SMCHD1-206ENST00000581631 TTC24A2A3L6 582 aaPredicted RBP10.18□□□□□ -0.78
SMCHD1-206ENST00000581631 J3QL48 77 aa10.17□□□□□ -0.78
SMCHD1-206ENST00000581631 CLCN1P35523 988 aa10.16□□□□□ -0.78
SMCHD1-206ENST00000581631 REPIN1Q9BWE0 567 aaKnown RBP10.16□□□□□ -0.78
SMCHD1-206ENST00000581631 JUNDP17535 347 aa10.15□□□□□ -0.78
SMCHD1-206ENST00000581631 SYMPKQ92797 1274 aaKnown RBP10.15□□□□□ -0.78
SMCHD1-206ENST00000581631 TULP1O00294 542 aaPredicted RBP10.14□□□□□ -0.79
SMCHD1-206ENST00000581631 WNT7BP56706 349 aa10.14□□□□□ -0.79
SMCHD1-206ENST00000581631 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.13□□□□□ -0.796e-6■□□□□ 10
SMCHD1-206ENST00000581631 ATP13A2Q9NQ11 1180 aa10.13□□□□□ -0.79
SMCHD1-206ENST00000581631 C11orf95C9JLR9 678 aaPredicted RBP10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 NFX1Q12986 1120 aaKnown RBP10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 RC3H1Q5TC82 1133 aaKnown RBP10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 RETREG3Q86VR2 466 aa10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 HPS1Q92902 700 aa10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 PCDHGC3Q9UN70 934 aa10.12□□□□□ -0.79
SMCHD1-206ENST00000581631 CCDC24Q8N4L8 307 aa10.11□□□□□ -0.79
SMCHD1-206ENST00000581631 LCE2CQ5TA81 110 aa10.1□□□□□ -0.79
SMCHD1-206ENST00000581631 PTCRAQ6ISU1 281 aaPredicted RBP10.1□□□□□ -0.79
SMCHD1-206ENST00000581631 SIAH2O43255 324 aa10.08□□□□□ -0.8
SMCHD1-206ENST00000581631 SNRPBP14678 240 aaKnown RBP10.08□□□□□ -0.8
SMCHD1-206ENST00000581631 TRIM47Q96LD4 638 aa10.08□□□□□ -0.8
SMCHD1-206ENST00000581631 WFS1O76024 890 aa10.07□□□□□ -0.8
SMCHD1-206ENST00000581631 FDX1P10109 184 aa10.07□□□□□ -0.8
SMCHD1-206ENST00000581631 NUTM1Q86Y26 1132 aa10.07□□□□□ -0.8
SMCHD1-206ENST00000581631 NUDT12Q9BQG2 462 aa10.07□□□□□ -0.8
SMCHD1-206ENST00000581631 SPIRE2Q8WWL2 714 aa10.06□□□□□ -0.8
SMCHD1-206ENST00000581631 WIPF1O43516 503 aa10.04□□□□□ -0.8
SMCHD1-206ENST00000581631 SSTR3P32745 418 aaPredicted RBP10.04□□□□□ -0.8
SMCHD1-206ENST00000581631 AMHR2Q16671 573 aa10.04□□□□□ -0.8
SMCHD1-206ENST00000581631 BARGINQ6ZT62 677 aa10.04□□□□□ -0.8
SMCHD1-206ENST00000581631 ZMYND10O75800 440 aa10.03□□□□□ -0.8
SMCHD1-206ENST00000581631 SENP2Q9HC62 589 aa10.03□□□□□ -0.8
SMCHD1-206ENST00000581631 MOXD2PA6NHM9 499 aa10.02□□□□□ -0.81
SMCHD1-206ENST00000581631 CCNYL3P0C7X3 344 aa10.02□□□□□ -0.81
SMCHD1-206ENST00000581631 SH3BP2P78314 561 aa10.02□□□□□ -0.81
SMCHD1-206ENST00000581631 ALDH1A1P00352 501 aa10.01□□□□□ -0.81
SMCHD1-206ENST00000581631 MS4A1P11836 297 aa10.01□□□□□ -0.81
SMCHD1-206ENST00000581631 NDUFV2P19404 249 aa10.01□□□□□ -0.81
SMCHD1-206ENST00000581631 PTPRNQ16849 979 aa10.01□□□□□ -0.81
SMCHD1-206ENST00000581631 C6orf229H3BNL8 230 aa10□□□□□ -0.81
SMCHD1-206ENST00000581631 TERTO14746 1132 aaKnown RBP9.99□□□□□ -0.81
SMCHD1-206ENST00000581631 KRI1Q8N9T8 703 aaKnown RBP9.99□□□□□ -0.81
SMCHD1-206ENST00000581631 KIFC2Q96AC6 838 aa9.99□□□□□ -0.81
SMCHD1-206ENST00000581631 EVA1BQ9NVM1 165 aa9.99□□□□□ -0.81
SMCHD1-206ENST00000581631 DESI1Q6ICB0 168 aa9.98□□□□□ -0.81
SMCHD1-206ENST00000581631 GIGYF2Q6Y7W6 1299 aaKnown RBP9.98□□□□□ -0.81
SMCHD1-206ENST00000581631 TRIM46Q7Z4K8 759 aa9.98□□□□□ -0.81
SMCHD1-206ENST00000581631 EHBP1Q8NDI1 1231 aa9.98□□□□□ -0.81
SMCHD1-206ENST00000581631 UNC93B1Q9H1C4 597 aa9.98□□□□□ -0.81
SMCHD1-206ENST00000581631 KCNH2Q12809 1159 aa9.96□□□□□ -0.82
SMCHD1-206ENST00000581631 PRR7Q8TB68 274 aa9.96□□□□□ -0.82
SMCHD1-206ENST00000581631 ZC3H15Q8WU90 426 aaKnown RBP9.96□□□□□ -0.82
SMCHD1-206ENST00000581631 GJA5P36382 358 aa9.95□□□□□ -0.82
SMCHD1-206ENST00000581631 MTMR2Q13614 643 aa9.94□□□□□ -0.82
SMCHD1-206ENST00000581631 TTLL12Q14166 644 aaPredicted RBP9.94□□□□□ -0.82
SMCHD1-206ENST00000581631 MPNDQ8N594 471 aa9.94□□□□□ -0.82
SMCHD1-206ENST00000581631 BAP1Q92560 729 aa9.94□□□□□ -0.82
SMCHD1-206ENST00000581631 SPDYE5A6NIY4 337 aa9.93□□□□□ -0.82
SMCHD1-206ENST00000581631 BMP1P13497 986 aa9.93□□□□□ -0.82
SMCHD1-206ENST00000581631 TLL2Q9Y6L7 1015 aa9.93□□□□□ -0.82
SMCHD1-206ENST00000581631 LINC01559Q495D7 138 aa9.92□□□□□ -0.82
SMCHD1-206ENST00000581631 RSBN1LQ6PCB5 846 aaPredicted RBP9.92□□□□□ -0.82
SMCHD1-206ENST00000581631 PARP9Q8IXQ6 854 aa9.92□□□□□ -0.82
SMCHD1-206ENST00000581631 ZNF511Q8NB15 262 aa9.92□□□□□ -0.82
SMCHD1-206ENST00000581631 BEGAINQ9BUH8 593 aa9.92□□□□□ -0.82
SMCHD1-206ENST00000581631 CAPN5O15484 640 aaPredicted RBP9.91□□□□□ -0.82
SMCHD1-206ENST00000581631 TBC1D2Q9BYX2 928 aa9.91□□□□□ -0.82
SMCHD1-206ENST00000581631 STK17AQ9UEE5 414 aa9.91□□□□□ -0.82
SMCHD1-206ENST00000581631 WASF2Q9Y6W5 498 aa9.91□□□□□ -0.82
SMCHD1-206ENST00000581631 INSM1Q01101 510 aaPredicted RBP9.9□□□□□ -0.82
SMCHD1-206ENST00000581631 LYPD8Q6UX82 237 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 176.5 ms