RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SIRT1Q96EB6 747 aa29.16■■■□□ 2.26
SS18-218ENST00000581021 PHLPP1O60346 1717 aa29.16■■■□□ 2.26
SS18-218ENST00000581021 KIAA1210Q9ULL0 1709 aa29.14■■■□□ 2.26
SS18-218ENST00000581021 PRAM1Q96QH2 718 aa29.14■■■□□ 2.26
SS18-218ENST00000581021 PCGF6Q9BYE7 350 aa29.14■■■□□ 2.26
SS18-218ENST00000581021 TRAK1Q9UPV9 953 aa29.12■■■□□ 2.25
SS18-218ENST00000581021 MED1Q15648 1581 aaPredicted RBP29.11■■■□□ 2.25
SS18-218ENST00000581021 NHSL1Q5SYE7 1610 aa29.1■■■□□ 2.25
SS18-218ENST00000581021 SAFB2Q14151 953 aaKnown RBP eCLIP29.1■■■□□ 2.25
SS18-218ENST00000581021 NBPF1Q3BBV0 1214 aa29.1■■■□□ 2.25
SS18-218ENST00000581021 ARHGEF28Q8N1W1 1705 aaKnown RBP29.09■■■□□ 2.25
SS18-218ENST00000581021 FMN2Q9NZ56 1722 aa29.08■■■□□ 2.25
SS18-218ENST00000581021 ORAI2Q96SN7 254 aa29.08■■■□□ 2.25
SS18-218ENST00000581021 DDX17Q92841 729 aaKnown RBP29.07■■■□□ 2.24
SS18-218ENST00000581021 ADGRB2O60241 1585 aa29.05■■■□□ 2.24
SS18-218ENST00000581021 DISP3Q9P2K9 1392 aa29.04■■■□□ 2.24
SS18-218ENST00000581021 TRPM1Q7Z4N2 1603 aa29.03■■■□□ 2.24
SS18-218ENST00000581021 NUTM2FA1L443 756 aa29.03■■■□□ 2.24
SS18-218ENST00000581021 POGKQ9P215 609 aa29.03■■■□□ 2.24
SS18-218ENST00000581021 NBPF8Q3BBV2 869 aa28.99■■■□□ 2.23
SS18-218ENST00000581021 JCADQ9P266 1359 aa28.99■■■□□ 2.23
SS18-218ENST00000581021 HIRIP3Q9BW71 556 aaPredicted RBP28.98■■■□□ 2.23
SS18-218ENST00000581021 USP32Q8NFA0 1604 aa28.98■■■□□ 2.23
SS18-218ENST00000581021 MINK1Q8N4C8 1332 aaPredicted RBP28.97■■■□□ 2.23
SS18-218ENST00000581021 ESCO1Q5FWF5 840 aa28.96■■■□□ 2.23
SS18-218ENST00000581021 TONSLQ96HA7 1378 aa28.96■■■□□ 2.23
SS18-218ENST00000581021 SHPRHQ149N8 1683 aa28.95■■■□□ 2.22
SS18-218ENST00000581021 RGPD8O14715 1765 aaPredicted RBP28.94■■■□□ 2.22
SS18-218ENST00000581021 SOS2Q07890 1332 aaPredicted RBP28.92■■■□□ 2.22
SS18-218ENST00000581021 PXDNQ92626 1479 aa28.91■■■□□ 2.22
SS18-218ENST00000581021 LRP6O75581 1613 aa28.91■■■□□ 2.22
SS18-218ENST00000581021 PRR36Q9H6K5 1346 aa28.9■■■□□ 2.22
SS18-218ENST00000581021 ANKARQ7Z5J8 1434 aa28.89■■■□□ 2.22
SS18-218ENST00000581021 ROCK2O75116 1388 aaKnown RBP28.88■■■□□ 2.21
SS18-218ENST00000581021 KIF1AQ12756 1690 aa28.88■■■□□ 2.21
SS18-218ENST00000581021 TULP4Q9NRJ4 1543 aa28.88■■■□□ 2.21
SS18-218ENST00000581021 GPRASP1Q5JY77 1395 aa28.88■■■□□ 2.21
SS18-218ENST00000581021 WASLO00401 505 aaPredicted RBP28.87■■■□□ 2.21
SS18-218ENST00000581021 FOXO3O43524 673 aa28.87■■■□□ 2.21
SS18-218ENST00000581021 PNPLA6Q8IY17 1366 aa28.87■■■□□ 2.21
SS18-218ENST00000581021 XPCQ01831 940 aaPredicted RBP28.86■■■□□ 2.21
SS18-218ENST00000581021 RALGAPBQ86X10 1494 aa28.85■■■□□ 2.21
SS18-218ENST00000581021 NPHP3Q7Z494 1330 aa28.85■■■□□ 2.21
SS18-218ENST00000581021 ILDR2Q71H61 639 aa28.84■■■□□ 2.21
SS18-218ENST00000581021 LRRC59Q96AG4 307 aaKnown RBP28.84■■■□□ 2.21
SS18-218ENST00000581021 QRICH2Q9H0J4 1663 aa28.83■■■□□ 2.21
SS18-218ENST00000581021 SPATA31A6Q5VVP1 1343 aa28.83■■■□□ 2.21
SS18-218ENST00000581021 CENPJQ9HC77 1338 aaPredicted RBP28.83■■■□□ 2.21
SS18-218ENST00000581021 ATP7BP35670 1465 aa28.83■■■□□ 2.21
SS18-218ENST00000581021 PHF8Q9UPP1 1060 aa28.82■■■□□ 2.2
SS18-218ENST00000581021 RGS17Q9UGC6 210 aaPredicted RBP28.81■■■□□ 2.2
SS18-218ENST00000581021 EIF3AQ14152 1382 aaKnown RBP28.79■■■□□ 2.2
SS18-218ENST00000581021 CLSPNQ9HAW4 1339 aa28.78■■■□□ 2.2
SS18-218ENST00000581021 PMFBP1Q8TBY8 1022 aa28.77■■■□□ 2.2
SS18-218ENST00000581021 PHF23Q9BUL5 403 aaPredicted RBP28.77■■■□□ 2.2
SS18-218ENST00000581021 CDK19Q9BWU1 502 aa28.77■■■□□ 2.2
SS18-218ENST00000581021 COL22A1Q8NFW1 1626 aaPredicted RBP28.76■■■□□ 2.19
SS18-218ENST00000581021 TOPAZ1Q8N9V7 1692 aa28.75■■■□□ 2.19
SS18-218ENST00000581021 NUTM2BA6NNL0 878 aaPredicted RBP28.74■■■□□ 2.19
SS18-218ENST00000581021 NUTM2EB1AL46 878 aaPredicted RBP28.74■■■□□ 2.19
SS18-218ENST00000581021 NUTM2AQ8IVF1 878 aaPredicted RBP28.74■■■□□ 2.19
SS18-218ENST00000581021 NUDT16Q96DE0 195 aaKnown RBP28.73■■■□□ 2.19
SS18-218ENST00000581021 KRT28Q7Z3Y7 464 aa28.72■■■□□ 2.19
SS18-218ENST00000581021 CARD11Q9BXL7 1154 aa28.71■■■□□ 2.19
SS18-218ENST00000581021 ITSN1Q15811 1721 aa28.71■■■□□ 2.19
SS18-218ENST00000581021 SPATA31A3Q5VYP0 1347 aa28.7■■■□□ 2.19
SS18-218ENST00000581021 TRPM3Q9HCF6 1732 aaPredicted RBP28.69■■■□□ 2.18
SS18-218ENST00000581021 CCER1Q8TC90 406 aaPredicted RBP28.68■■■□□ 2.18
SS18-218ENST00000581021 TNS3Q68CZ2 1445 aa28.68■■■□□ 2.18
SS18-218ENST00000581021 CABP2Q9NPB3 220 aa28.67■■■□□ 2.18
SS18-218ENST00000581021 SBNO1A3KN83 1393 aa28.65■■■□□ 2.18
SS18-218ENST00000581021 SRPK2P78362 688 aaKnown RBP28.64■■■□□ 2.18
SS18-218ENST00000581021 PSME1Q06323 249 aa28.64■■■□□ 2.18
SS18-218ENST00000581021 MEX3CQ5U5Q3 659 aaKnown RBP28.64■■■□□ 2.18
SS18-218ENST00000581021 POTEAQ6S8J7 498 aa28.64■■■□□ 2.18
SS18-218ENST00000581021 CCDC61Q9Y6R9 512 aa28.63■■■□□ 2.17
SS18-218ENST00000581021 POLR3AO14802 1390 aaPredicted RBP28.62■■■□□ 2.17
SS18-218ENST00000581021 SBNO2Q9Y2G9 1366 aa28.62■■■□□ 2.17
SS18-218ENST00000581021 ADAMTS2O95450 1211 aa28.61■■■□□ 2.17
SS18-218ENST00000581021 ALS2Q96Q42 1657 aa28.61■■■□□ 2.17
SS18-218ENST00000581021 PPIP5K1Q6PFW1 1433 aa28.6■■■□□ 2.17
SS18-218ENST00000581021 NGDNQ8NEJ9 315 aaKnown RBP28.6■■■□□ 2.17
SS18-218ENST00000581021 TIMELESSQ9UNS1 1208 aa28.6■■■□□ 2.17
SS18-218ENST00000581021 PLEKHG3A1L390 1219 aa28.59■■■□□ 2.17
SS18-218ENST00000581021 ACEP12821 1306 aa28.58■■■□□ 2.17
SS18-218ENST00000581021 EVC2Q86UK5 1308 aa28.58■■■□□ 2.17
SS18-218ENST00000581021 ABCA3Q99758 1704 aa28.57■■■□□ 2.16
SS18-218ENST00000581021 C8orf37Q96NL8 207 aa28.57■■■□□ 2.16
SS18-218ENST00000581021 AFF2P51816 1311 aa28.56■■■□□ 2.16
SS18-218ENST00000581021 ARHGEF10O15013 1369 aa28.55■■■□□ 2.16
SS18-218ENST00000581021 CABLES1Q8TDN4 633 aa28.55■■■□□ 2.16
SS18-218ENST00000581021 LMOD2Q6P5Q4 547 aa28.53■■■□□ 2.16
SS18-218ENST00000581021 MARF1Q9Y4F3 1742 aaKnown RBP28.52■■■□□ 2.16
SS18-218ENST00000581021 TESK2Q96S53 571 aa28.52■■■□□ 2.16
SS18-218ENST00000581021 CABP1Q9NZU7 370 aa28.52■■■□□ 2.16
SS18-218ENST00000581021 ST20-MTHFSA0A0A6YYL1 179 aa28.51■■■□□ 2.15
SS18-218ENST00000581021 PLEKHG5O94827 1062 aa28.51■■■□□ 2.15
SS18-218ENST00000581021 CRYBG1Q9Y4K1 1723 aa28.51■■■□□ 2.15
SS18-218ENST00000581021 USP47Q96K76 1375 aa28.5■■■□□ 2.15
SS18-218ENST00000581021 PAK3O75914 559 aaPredicted RBP28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms