RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ADGRB2O60241 1585 aa22.54■■□□□ 1.2
SS18-211ENST00000578954 TULP4Q9NRJ4 1543 aa22.53■■□□□ 1.2
SS18-211ENST00000578954 WAPLQ7Z5K2 1190 aa22.52■■□□□ 1.2
SS18-211ENST00000578954 DMRT2Q9Y5R5 561 aa22.52■■□□□ 1.2
SS18-211ENST00000578954 PUS7Q96PZ0 661 aaKnown RBP22.5■■□□□ 1.19
SS18-211ENST00000578954 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.5■■□□□ 1.19
SS18-211ENST00000578954 CDCA8Q53HL2 280 aa22.49■■□□□ 1.19
SS18-211ENST00000578954 STRCP1A6NGW2 1772 aa22.48■■□□□ 1.19
SS18-211ENST00000578954 SAFB2Q14151 953 aaKnown RBP eCLIP22.47■■□□□ 1.19
SS18-211ENST00000578954 EVC2Q86UK5 1308 aa22.47■■□□□ 1.19
SS18-211ENST00000578954 MINK1Q8N4C8 1332 aaPredicted RBP22.46■■□□□ 1.19
SS18-211ENST00000578954 NCOA3Q9Y6Q9 1424 aa22.43■■□□□ 1.18
SS18-211ENST00000578954 MYOM1P52179 1685 aa22.42■■□□□ 1.18
SS18-211ENST00000578954 ADGRL3Q9HAR2 1447 aa22.41■■□□□ 1.18
SS18-211ENST00000578954 NALCNQ8IZF0 1738 aa22.41■■□□□ 1.18
SS18-211ENST00000578954 CDC42BPGQ6DT37 1551 aa22.41■■□□□ 1.18
SS18-211ENST00000578954 WASLO00401 505 aaPredicted RBP22.4■■□□□ 1.18
SS18-211ENST00000578954 ATAD2Q6PL18 1390 aa22.39■■□□□ 1.18
SS18-211ENST00000578954 CDK19Q9BWU1 502 aa22.38■■□□□ 1.17
SS18-211ENST00000578954 ZNF335Q9H4Z2 1342 aaPredicted RBP22.37■■□□□ 1.17
SS18-211ENST00000578954 DDX10Q13206 875 aaKnown RBP22.37■■□□□ 1.17
SS18-211ENST00000578954 NINLQ9Y2I6 1382 aa22.37■■□□□ 1.17
SS18-211ENST00000578954 PROSER2Q86WR7 435 aaPredicted RBP22.36■■□□□ 1.17
SS18-211ENST00000578954 TMEM94Q12767 1356 aa22.36■■□□□ 1.17
SS18-211ENST00000578954 LRRC7Q96NW7 1537 aa22.36■■□□□ 1.17
SS18-211ENST00000578954 ATP7BP35670 1465 aa22.35■■□□□ 1.17
SS18-211ENST00000578954 CABP2Q9NPB3 220 aa22.35■■□□□ 1.17
SS18-211ENST00000578954 FMN2Q9NZ56 1722 aa22.34■■□□□ 1.17
SS18-211ENST00000578954 SRPK2P78362 688 aaKnown RBP22.34■■□□□ 1.17
SS18-211ENST00000578954 POLR3GLQ9BT43 218 aa22.34■■□□□ 1.17
SS18-211ENST00000578954 DCCP43146 1447 aa22.33■■□□□ 1.17
SS18-211ENST00000578954 ANKARQ7Z5J8 1434 aa22.33■■□□□ 1.17
SS18-211ENST00000578954 XIRP1Q702N8 1843 aaKnown RBP22.32■■□□□ 1.16
SS18-211ENST00000578954 TOPAZ1Q8N9V7 1692 aa22.32■■□□□ 1.16
SS18-211ENST00000578954 USP32Q8NFA0 1604 aa22.31■■□□□ 1.16
SS18-211ENST00000578954 DIEXFQ68CQ4 756 aaKnown RBP22.31■■□□□ 1.16
SS18-211ENST00000578954 LTBP4Q8N2S1 1624 aa22.31■■□□□ 1.16
SS18-211ENST00000578954 PRR36Q9H6K5 1346 aa22.31■■□□□ 1.16
SS18-211ENST00000578954 NUDT16Q96DE0 195 aaKnown RBP22.28■■□□□ 1.16
SS18-211ENST00000578954 RBM33Q96EV2 1170 aaKnown RBP22.28■■□□□ 1.16
SS18-211ENST00000578954 C19orf44Q9H6X5 657 aa22.28■■□□□ 1.16
SS18-211ENST00000578954 CCDC61Q9Y6R9 512 aa22.27■■□□□ 1.16
SS18-211ENST00000578954 ANKRD36BQ8N2N9 1353 aa22.26■■□□□ 1.15
SS18-211ENST00000578954 ITSN1Q15811 1721 aa22.26■■□□□ 1.15
SS18-211ENST00000578954 CD163L1Q9NR16 1453 aa22.26■■□□□ 1.15
SS18-211ENST00000578954 SLC12A5Q9H2X9 1139 aa22.25■■□□□ 1.15
SS18-211ENST00000578954 PANK3Q9H999 370 aa22.25■■□□□ 1.15
SS18-211ENST00000578954 PPIP5K1Q6PFW1 1433 aa22.24■■□□□ 1.15
SS18-211ENST00000578954 PER1O15534 1290 aaPredicted RBP22.24■■□□□ 1.15
SS18-211ENST00000578954 C14orf37Q86TY3 774 aa22.23■■□□□ 1.15
SS18-211ENST00000578954 MSH6P52701 1360 aa22.23■■□□□ 1.15
SS18-211ENST00000578954 PLEKHG3A1L390 1219 aa22.22■■□□□ 1.15
SS18-211ENST00000578954 TMC1Q8TDI8 760 aa22.22■■□□□ 1.15
SS18-211ENST00000578954 CPSF1Q10570 1443 aaKnown RBP22.22■■□□□ 1.15
SS18-211ENST00000578954 CABP1Q9NZU7 370 aa22.21■■□□□ 1.15
SS18-211ENST00000578954 RGPD8O14715 1765 aaPredicted RBP22.2■■□□□ 1.14
SS18-211ENST00000578954 A0A1W2PP64 1363 aa22.2■■□□□ 1.14
SS18-211ENST00000578954 MST1RQ04912 1400 aa22.2■■□□□ 1.14
SS18-211ENST00000578954 AKAP12Q02952 1782 aa22.19■■□□□ 1.14
SS18-211ENST00000578954 C1orf167Q5SNV9 1468 aa22.18■■□□□ 1.14
SS18-211ENST00000578954 POLR3AO14802 1390 aaPredicted RBP22.18■■□□□ 1.14
SS18-211ENST00000578954 CADPS2Q86UW7 1296 aa22.18■■□□□ 1.14
SS18-211ENST00000578954 CARD14Q9BXL6 1004 aa22.18■■□□□ 1.14
SS18-211ENST00000578954 TERF2IPQ9NYB0 399 aa22.18■■□□□ 1.14
SS18-211ENST00000578954 NPC1L1Q9UHC9 1359 aa22.17■■□□□ 1.14
SS18-211ENST00000578954 MON2Q7Z3U7 1717 aa22.17■■□□□ 1.14
SS18-211ENST00000578954 NUTM2FA1L443 756 aa22.16■■□□□ 1.14
SS18-211ENST00000578954 ATF3P18847 181 aa22.16■■□□□ 1.14
SS18-211ENST00000578954 NSD3Q9BZ95 1437 aa22.15■■□□□ 1.14
SS18-211ENST00000578954 HDGFL2Q7Z4V5 671 aaPredicted RBP22.15■■□□□ 1.14
SS18-211ENST00000578954 AMER1Q5JTC6 1135 aaPredicted RBP22.13■■□□□ 1.13
SS18-211ENST00000578954 ZNF692Q9BU19 519 aaPredicted RBP22.13■■□□□ 1.13
SS18-211ENST00000578954 KNSTRNQ9Y448 316 aa22.13■■□□□ 1.13
SS18-211ENST00000578954 KIF1AQ12756 1690 aa22.13■■□□□ 1.13
SS18-211ENST00000578954 NRKQ7Z2Y5 1582 aa22.12■■□□□ 1.13
SS18-211ENST00000578954 ACEP12821 1306 aa22.12■■□□□ 1.13
SS18-211ENST00000578954 EDC4Q6P2E9 1401 aaKnown RBP22.12■■□□□ 1.13
SS18-211ENST00000578954 PHF8Q9UPP1 1060 aa22.11■■□□□ 1.13
SS18-211ENST00000578954 USP6P35125 1406 aa22.11■■□□□ 1.13
SS18-211ENST00000578954 SSH2Q76I76 1423 aa22.11■■□□□ 1.13
SS18-211ENST00000578954 KTN1Q86UP2 1357 aaKnown RBP22.11■■□□□ 1.13
SS18-211ENST00000578954 IQSEC2Q5JU85 1478 aa22.09■■□□□ 1.13
SS18-211ENST00000578954 BRD4O60885 1362 aaPredicted RBP22.09■■□□□ 1.13
SS18-211ENST00000578954 NSD2O96028 1365 aa22.09■■□□□ 1.13
SS18-211ENST00000578954 ANP32CO43423 234 aa22.08■■□□□ 1.13
SS18-211ENST00000578954 PRKRIP1Q9H875 184 aaPredicted RBP22.08■■□□□ 1.13
SS18-211ENST00000578954 CGNL1Q0VF96 1302 aa22.07■■□□□ 1.12
SS18-211ENST00000578954 ESCO1Q5FWF5 840 aa22.07■■□□□ 1.12
SS18-211ENST00000578954 PMFBP1Q8TBY8 1022 aa22.07■■□□□ 1.12
SS18-211ENST00000578954 ORAI2Q96SN7 254 aa22.07■■□□□ 1.12
SS18-211ENST00000578954 PARD3Q8TEW0 1356 aa22.07■■□□□ 1.12
SS18-211ENST00000578954 NGDNQ8NEJ9 315 aaKnown RBP22.05■■□□□ 1.12
SS18-211ENST00000578954 SLAIN2Q9P270 581 aa22.04■■□□□ 1.12
SS18-211ENST00000578954 KIF20BQ96Q89 1820 aa22.03■■□□□ 1.12
SS18-211ENST00000578954 MIER1Q8N108 512 aa22.03■■□□□ 1.12
SS18-211ENST00000578954 ANKRD26Q9UPS8 1709 aa22.03■■□□□ 1.12
SS18-211ENST00000578954 RALBP1Q15311 655 aa22.02■■□□□ 1.12
SS18-211ENST00000578954 TTC21BQ7Z4L5 1316 aa22.02■■□□□ 1.12
SS18-211ENST00000578954 TTC21AQ8NDW8 1320 aa22.02■■□□□ 1.12
SS18-211ENST00000578954 FYB1O15117 783 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms