RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 KNDC1Q76NI1 1749 aa22.71■■□□□ 1.23
RAB40C-208ENST00000564703 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.71■■□□□ 1.23
RAB40C-208ENST00000564703 CARD11Q9BXL7 1154 aa22.7■■□□□ 1.22
RAB40C-208ENST00000564703 PLEKHH1Q9ULM0 1364 aa22.7■■□□□ 1.22
RAB40C-208ENST00000564703 DCCP43146 1447 aa22.7■■□□□ 1.22
RAB40C-208ENST00000564703 DLC1Q96QB1 1528 aa22.69■■□□□ 1.22
RAB40C-208ENST00000564703 MINK1Q8N4C8 1332 aaPredicted RBP22.66■■□□□ 1.22
RAB40C-208ENST00000564703 TRPM1Q7Z4N2 1603 aa22.65■■□□□ 1.22
RAB40C-208ENST00000564703 HIRIP3Q9BW71 556 aaPredicted RBP22.64■■□□□ 1.21
RAB40C-208ENST00000564703 NALCNQ8IZF0 1738 aa22.63■■□□□ 1.21
RAB40C-208ENST00000564703 NUTM2FA1L443 756 aa22.63■■□□□ 1.21
RAB40C-208ENST00000564703 CENPJQ9HC77 1338 aaPredicted RBP22.62■■□□□ 1.21
RAB40C-208ENST00000564703 EIF3AQ14152 1382 aaKnown RBP22.62■■□□□ 1.21
RAB40C-208ENST00000564703 HSPA1LP34931 641 aa22.6■■□□□ 1.21
RAB40C-208ENST00000564703 ESCO1Q5FWF5 840 aa22.6■■□□□ 1.21
RAB40C-208ENST00000564703 MST1RQ04912 1400 aa22.59■■□□□ 1.21
RAB40C-208ENST00000564703 BRINP3Q76B58 766 aa22.59■■□□□ 1.21
RAB40C-208ENST00000564703 GPRASP1Q5JY77 1395 aa22.59■■□□□ 1.21
RAB40C-208ENST00000564703 RALGAPBQ86X10 1494 aa22.59■■□□□ 1.21
RAB40C-208ENST00000564703 WASLO00401 505 aaPredicted RBP22.58■■□□□ 1.21
RAB40C-208ENST00000564703 ARHGEF28Q8N1W1 1705 aaKnown RBP22.57■■□□□ 1.2
RAB40C-208ENST00000564703 ORAI2Q96SN7 254 aa22.57■■□□□ 1.2
RAB40C-208ENST00000564703 C1orf167Q5SNV9 1468 aa22.57■■□□□ 1.2
RAB40C-208ENST00000564703 CDC42BPGQ6DT37 1551 aa22.56■■□□□ 1.2
RAB40C-208ENST00000564703 ROBO1Q9Y6N7 1651 aa22.55■■□□□ 1.2
RAB40C-208ENST00000564703 CDK19Q9BWU1 502 aa22.55■■□□□ 1.2
RAB40C-208ENST00000564703 SLC24A1O60721 1099 aa22.52■■□□□ 1.2
RAB40C-208ENST00000564703 SRPK2P78362 688 aaKnown RBP22.52■■□□□ 1.2
RAB40C-208ENST00000564703 EVC2Q86UK5 1308 aa22.51■■□□□ 1.19
RAB40C-208ENST00000564703 NUDT16Q96DE0 195 aaKnown RBP22.49■■□□□ 1.19
RAB40C-208ENST00000564703 PHF8Q9UPP1 1060 aa22.49■■□□□ 1.19
RAB40C-208ENST00000564703 ST20-MTHFSA0A0A6YYL1 179 aa22.48■■□□□ 1.19
RAB40C-208ENST00000564703 FOXO3O43524 673 aa22.48■■□□□ 1.19
RAB40C-208ENST00000564703 FMN2Q9NZ56 1722 aa22.48■■□□□ 1.19
RAB40C-208ENST00000564703 ADGRB2O60241 1585 aa22.47■■□□□ 1.19
RAB40C-208ENST00000564703 NPHP3Q7Z494 1330 aa22.47■■□□□ 1.19
RAB40C-208ENST00000564703 ANKARQ7Z5J8 1434 aa22.47■■□□□ 1.19
RAB40C-208ENST00000564703 DDX17Q92841 729 aaKnown RBP22.46■■□□□ 1.19
RAB40C-208ENST00000564703 LRRC59Q96AG4 307 aaKnown RBP22.46■■□□□ 1.19
RAB40C-208ENST00000564703 QRICH2Q9H0J4 1663 aa22.46■■□□□ 1.19
RAB40C-208ENST00000564703 PSME1Q06323 249 aa22.45■■□□□ 1.18
RAB40C-208ENST00000564703 PMFBP1Q8TBY8 1022 aa22.45■■□□□ 1.18
RAB40C-208ENST00000564703 CABP2Q9NPB3 220 aa22.45■■□□□ 1.18
RAB40C-208ENST00000564703 CCDC61Q9Y6R9 512 aa22.45■■□□□ 1.18
RAB40C-208ENST00000564703 PHLPP1O60346 1717 aa22.44■■□□□ 1.18
RAB40C-208ENST00000564703 USP47Q96K76 1375 aa22.43■■□□□ 1.18
RAB40C-208ENST00000564703 NGDNQ8NEJ9 315 aaKnown RBP22.43■■□□□ 1.18
RAB40C-208ENST00000564703 TULP4Q9NRJ4 1543 aa22.42■■□□□ 1.18
RAB40C-208ENST00000564703 PRR36Q9H6K5 1346 aa22.42■■□□□ 1.18
RAB40C-208ENST00000564703 RGPD8O14715 1765 aaPredicted RBP22.42■■□□□ 1.18
RAB40C-208ENST00000564703 EIF4G2P78344 907 aaKnown RBP eCLIP22.41■■□□□ 1.181e-6■■■■□ 25.9
RAB40C-208ENST00000564703 KRT28Q7Z3Y7 464 aa22.41■■□□□ 1.18
RAB40C-208ENST00000564703 SBNO2Q9Y2G9 1366 aa22.4■■□□□ 1.18
RAB40C-208ENST00000564703 AHDC1Q5TGY3 1603 aaPredicted RBP22.4■■□□□ 1.18
RAB40C-208ENST00000564703 XPCQ01831 940 aaPredicted RBP22.39■■□□□ 1.17
RAB40C-208ENST00000564703 SOS2Q07890 1332 aaPredicted RBP22.38■■□□□ 1.17
RAB40C-208ENST00000564703 TMF1P82094 1093 aa22.38■■□□□ 1.17
RAB40C-208ENST00000564703 JCADQ9P266 1359 aa22.38■■□□□ 1.17
RAB40C-208ENST00000564703 KIF1AQ12756 1690 aa22.36■■□□□ 1.17
RAB40C-208ENST00000564703 PLEKHG3A1L390 1219 aa22.36■■□□□ 1.17
RAB40C-208ENST00000564703 TESK2Q96S53 571 aa22.36■■□□□ 1.17
RAB40C-208ENST00000564703 CABP1Q9NZU7 370 aa22.36■■□□□ 1.17
RAB40C-208ENST00000564703 NHSL1Q5SYE7 1610 aa22.35■■□□□ 1.17
RAB40C-208ENST00000564703 CDCA8Q53HL2 280 aa22.35■■□□□ 1.17
RAB40C-208ENST00000564703 PUS7Q96PZ0 661 aaKnown RBP22.35■■□□□ 1.17
RAB40C-208ENST00000564703 USP32Q8NFA0 1604 aa22.35■■□□□ 1.17
RAB40C-208ENST00000564703 ATAD2Q6PL18 1390 aa22.34■■□□□ 1.17
RAB40C-208ENST00000564703 ATP7BP35670 1465 aa22.34■■□□□ 1.17
RAB40C-208ENST00000564703 ACEP12821 1306 aa22.33■■□□□ 1.17
RAB40C-208ENST00000564703 LMOD2Q6P5Q4 547 aa22.33■■□□□ 1.17
RAB40C-208ENST00000564703 TMC1Q8TDI8 760 aa22.33■■□□□ 1.17
RAB40C-208ENST00000564703 PPIP5K1Q6PFW1 1433 aa22.32■■□□□ 1.16
RAB40C-208ENST00000564703 COL16A1Q07092 1604 aaPredicted RBP22.32■■□□□ 1.16
RAB40C-208ENST00000564703 ITSN1Q15811 1721 aa22.32■■□□□ 1.16
RAB40C-208ENST00000564703 PAK3O75914 559 aaPredicted RBP22.32■■□□□ 1.16
RAB40C-208ENST00000564703 HSPA5P11021 654 aaKnown RBP22.32■■□□□ 1.16
RAB40C-208ENST00000564703 SPATA31A6Q5VVP1 1343 aa22.31■■□□□ 1.16
RAB40C-208ENST00000564703 ZNF692Q9BU19 519 aaPredicted RBP22.3■■□□□ 1.16
RAB40C-208ENST00000564703 NUTM2BA6NNL0 878 aaPredicted RBP22.29■■□□□ 1.16
RAB40C-208ENST00000564703 NUTM2EB1AL46 878 aaPredicted RBP22.29■■□□□ 1.16
RAB40C-208ENST00000564703 NUTM2AQ8IVF1 878 aaPredicted RBP22.29■■□□□ 1.16
RAB40C-208ENST00000564703 SPATA31A3Q5VYP0 1347 aa22.29■■□□□ 1.16
RAB40C-208ENST00000564703 PXDNQ92626 1479 aa22.28■■□□□ 1.16
RAB40C-208ENST00000564703 SBNO1A3KN83 1393 aa22.26■■□□□ 1.15
RAB40C-208ENST00000564703 POLR3AO14802 1390 aaPredicted RBP22.26■■□□□ 1.15
RAB40C-208ENST00000564703 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
RAB40C-208ENST00000564703 MEX3CQ5U5Q3 659 aaKnown RBP22.25■■□□□ 1.15
RAB40C-208ENST00000564703 HDGFL2Q7Z4V5 671 aaPredicted RBP22.25■■□□□ 1.15
RAB40C-208ENST00000564703 SLC12A5Q9H2X9 1139 aa22.25■■□□□ 1.15
RAB40C-208ENST00000564703 TERF2IPQ9NYB0 399 aa22.25■■□□□ 1.15
RAB40C-208ENST00000564703 PNPLA6Q8IY17 1366 aa22.25■■□□□ 1.15
RAB40C-208ENST00000564703 HAP1P54257 671 aaPredicted RBP22.24■■□□□ 1.15
RAB40C-208ENST00000564703 POLR3GLQ9BT43 218 aa22.23■■□□□ 1.15
RAB40C-208ENST00000564703 ARHGEF10O15013 1369 aa22.23■■□□□ 1.15
RAB40C-208ENST00000564703 PLEKHG5O94827 1062 aa22.22■■□□□ 1.15
RAB40C-208ENST00000564703 PHF23Q9BUL5 403 aaPredicted RBP22.22■■□□□ 1.15
RAB40C-208ENST00000564703 TOPAZ1Q8N9V7 1692 aa22.22■■□□□ 1.15
RAB40C-208ENST00000564703 DISP3Q9P2K9 1392 aa22.22■■□□□ 1.15
RAB40C-208ENST00000564703 SHPRHQ149N8 1683 aa22.21■■□□□ 1.15
RAB40C-208ENST00000564703 ABTB2Q8N961 1025 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms