RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MTHFSP49914 203 aa16.93■□□□□ 0.3
CLN3-210ENST00000563874 POGKQ9P215 609 aa16.92■□□□□ 0.3
CLN3-210ENST00000563874 MAP3K4Q9Y6R4 1608 aa16.92■□□□□ 0.3
CLN3-210ENST00000563874 RIMBP3CA6NJZ7 1639 aa16.91■□□□□ 0.3
CLN3-210ENST00000563874 RIMBP3BA6NNM3 1639 aa16.91■□□□□ 0.3
CLN3-210ENST00000563874 RIMBP3Q9UFD9 1639 aa16.91■□□□□ 0.3
CLN3-210ENST00000563874 SENP3Q9H4L4 574 aaPredicted RBP16.91■□□□□ 0.3
CLN3-210ENST00000563874 PDZRN3Q9UPQ7 1066 aa16.91■□□□□ 0.3
CLN3-210ENST00000563874 ATP7AQ04656 1500 aa16.9■□□□□ 0.3
CLN3-210ENST00000563874 NOS1P29475 1434 aa16.9■□□□□ 0.3
CLN3-210ENST00000563874 BECN1Q14457 450 aa16.9■□□□□ 0.3
CLN3-210ENST00000563874 DEPDC5O75140 1603 aa16.9■□□□□ 0.3
CLN3-210ENST00000563874 NINLQ9Y2I6 1382 aa16.89■□□□□ 0.3
CLN3-210ENST00000563874 NUTM2DQ5VT03 806 aaPredicted RBP16.89■□□□□ 0.29
CLN3-210ENST00000563874 SPRYD3Q8NCJ5 442 aa16.89■□□□□ 0.29
CLN3-210ENST00000563874 PMFBP1Q8TBY8 1022 aa16.89■□□□□ 0.29
CLN3-210ENST00000563874 FANCAO15360 1455 aa16.89■□□□□ 0.29
CLN3-210ENST00000563874 MYOM2P54296 1465 aa16.88■□□□□ 0.29
CLN3-210ENST00000563874 KIAA1210Q9ULL0 1709 aa16.88■□□□□ 0.29
CLN3-210ENST00000563874 U2AF1L5P0DN76 240 aaPredicted RBP16.87■□□□□ 0.29
CLN3-210ENST00000563874 U2AF1Q01081 240 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLN3-210ENST00000563874 UPF2Q9HAU5 1272 aaKnown RBP16.87■□□□□ 0.29
CLN3-210ENST00000563874 VWDEQ8N2E2 1590 aa16.86■□□□□ 0.29
CLN3-210ENST00000563874 NLRP1Q9C000 1473 aa16.86■□□□□ 0.29
CLN3-210ENST00000563874 ARXQ96QS3 562 aa16.86■□□□□ 0.29
CLN3-210ENST00000563874 TSR2Q969E8 191 aaKnown RBP16.85■□□□□ 0.29
CLN3-210ENST00000563874 PHF23Q9BUL5 403 aaPredicted RBP16.85■□□□□ 0.29
CLN3-210ENST00000563874 WDR63Q8IWG1 891 aa16.85■□□□□ 0.29
CLN3-210ENST00000563874 ADGRL1O94910 1474 aa16.85■□□□□ 0.29
CLN3-210ENST00000563874 SAFB2Q14151 953 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLN3-210ENST00000563874 UHRF1BP1LA0JNW5 1464 aa16.85■□□□□ 0.29
CLN3-210ENST00000563874 CFAP53Q96M91 514 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 TBC1D2Q9BYX2 928 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 SBNO2Q9Y2G9 1366 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 GGT6Q6P531 493 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 TBC1D32Q96NH3 1257 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 RWDD1Q9H446 243 aaPredicted RBP16.84■□□□□ 0.29
CLN3-210ENST00000563874 SHPRHQ149N8 1683 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 MROH2AA6NES4 1674 aa16.84■□□□□ 0.29
CLN3-210ENST00000563874 FTSJ3Q8IY81 847 aaKnown RBP16.83■□□□□ 0.29
CLN3-210ENST00000563874 MROH1Q8NDA8 1641 aa16.83■□□□□ 0.28
CLN3-210ENST00000563874 IQSEC2Q5JU85 1478 aa16.83■□□□□ 0.28
CLN3-210ENST00000563874 INO80Q9ULG1 1556 aaPredicted RBP16.83■□□□□ 0.28
CLN3-210ENST00000563874 VIRMAQ69YN4 1812 aaKnown RBP16.82■□□□□ 0.28
CLN3-210ENST00000563874 ANTXR1Q9H6X2 564 aa16.82■□□□□ 0.28
CLN3-210ENST00000563874 KIF1BO60333 1816 aa16.82■□□□□ 0.28
CLN3-210ENST00000563874 MYH16Q9H6N6 1097 aa16.82■□□□□ 0.28
CLN3-210ENST00000563874 C14orf93Q9H972 538 aaKnown RBP16.82■□□□□ 0.28
CLN3-210ENST00000563874 MVPQ14764 893 aaKnown RBP16.81■□□□□ 0.28
CLN3-210ENST00000563874 CFAP65Q6ZU64 1925 aaKnown RBP16.81■□□□□ 0.28
CLN3-210ENST00000563874 EFCAB6Q5THR3 1501 aa16.81■□□□□ 0.28
CLN3-210ENST00000563874 CABP2Q9NPB3 220 aa16.81■□□□□ 0.28
CLN3-210ENST00000563874 U2SURPO15042 1029 aaKnown RBP16.8■□□□□ 0.28
CLN3-210ENST00000563874 ZNF518AQ6AHZ1 1483 aa16.8■□□□□ 0.28
CLN3-210ENST00000563874 ZKSCAN2Q63HK3 967 aa16.8■□□□□ 0.28
CLN3-210ENST00000563874 NRXN1Q9ULB1 1477 aa16.8■□□□□ 0.28
CLN3-210ENST00000563874 MFAP1P55081 439 aaKnown RBP16.79■□□□□ 0.28
CLN3-210ENST00000563874 DZIP1LQ8IYY4 767 aaKnown RBP16.79■□□□□ 0.28
CLN3-210ENST00000563874 SMC4Q9NTJ3 1288 aa16.79■□□□□ 0.28
CLN3-210ENST00000563874 ARAP3Q8WWN8 1544 aa16.79■□□□□ 0.28
CLN3-210ENST00000563874 PPRC1Q5VV67 1664 aaKnown RBP16.79■□□□□ 0.28
CLN3-210ENST00000563874 EXOSC9Q06265 439 aaKnown RBP16.78■□□□□ 0.28
CLN3-210ENST00000563874 CCDC27Q2M243 656 aa16.78■□□□□ 0.28
CLN3-210ENST00000563874 AAMPQ13685 434 aa16.78■□□□□ 0.28
CLN3-210ENST00000563874 NEURL4Q96JN8 1562 aa16.77■□□□□ 0.28
CLN3-210ENST00000563874 ITPRIPQ8IWB1 547 aa16.77■□□□□ 0.28
CLN3-210ENST00000563874 MYO3AQ8NEV4 1616 aa16.77■□□□□ 0.28
CLN3-210ENST00000563874 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
CLN3-210ENST00000563874 GZF1Q9H116 711 aaPredicted RBP16.76■□□□□ 0.27
CLN3-210ENST00000563874 TRIM27P14373 513 aa16.76■□□□□ 0.27
CLN3-210ENST00000563874 GGNBP2Q9H3C7 697 aa16.76■□□□□ 0.27
CLN3-210ENST00000563874 QRICH2Q9H0J4 1663 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 SSH1Q8WYL5 1049 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 ABCA9Q8IUA7 1624 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 NPATQ14207 1427 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 STK26Q9P289 416 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 EVC2Q86UK5 1308 aa16.75■□□□□ 0.27
CLN3-210ENST00000563874 ADGRB3O60242 1522 aa16.74■□□□□ 0.27
CLN3-210ENST00000563874 C22orf23Q9BZE7 217 aa16.74■□□□□ 0.27
CLN3-210ENST00000563874 ADGRB1O14514 1584 aa16.73■□□□□ 0.27
CLN3-210ENST00000563874 FAM43AQ8N2R8 423 aa16.73■□□□□ 0.27
CLN3-210ENST00000563874 SETBP1Q9Y6X0 1596 aa16.72■□□□□ 0.27
CLN3-210ENST00000563874 TMPOP42166 694 aaKnown RBP16.72■□□□□ 0.27
CLN3-210ENST00000563874 NOB1Q9ULX3 412 aaKnown RBP16.72■□□□□ 0.27
CLN3-210ENST00000563874 ANKRD36BQ8N2N9 1353 aa16.72■□□□□ 0.27
CLN3-210ENST00000563874 SRPK2P78362 688 aaKnown RBP16.71■□□□□ 0.27
CLN3-210ENST00000563874 TRIM35Q9UPQ4 493 aa16.71■□□□□ 0.27
CLN3-210ENST00000563874 KIDINS220Q9ULH0 1771 aa16.7■□□□□ 0.26
CLN3-210ENST00000563874 CD109Q6YHK3 1445 aa16.7■□□□□ 0.26
CLN3-210ENST00000563874 CYB5RLQ6IPT4 315 aa16.7■□□□□ 0.26
CLN3-210ENST00000563874 ATF7IPQ6VMQ6 1270 aa16.7■□□□□ 0.26
CLN3-210ENST00000563874 TMEM57Q8N5G2 664 aa16.7■□□□□ 0.26
CLN3-210ENST00000563874 MCM4P33991 863 aa16.69■□□□□ 0.26
CLN3-210ENST00000563874 PLEKHF1Q96S99 279 aa16.69■□□□□ 0.26
CLN3-210ENST00000563874 DDX19BQ9UMR2 479 aa16.69■□□□□ 0.26
CLN3-210ENST00000563874 ASXL2Q76L83 1435 aa16.69■□□□□ 0.26
CLN3-210ENST00000563874 ZMYM3Q14202 1370 aa16.69■□□□□ 0.26
CLN3-210ENST00000563874 A0A1W2PP64 1363 aa16.68■□□□□ 0.26
CLN3-210ENST00000563874 TULP4Q9NRJ4 1543 aa16.68■□□□□ 0.26
CLN3-210ENST00000563874 RIPK4P57078 832 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms