RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ROCK2O75116 1388 aaKnown RBP18.59■□□□□ 0.57
NEDD8-208ENST00000560427 PLEKHH1Q9ULM0 1364 aa18.59■□□□□ 0.57
NEDD8-208ENST00000560427 WAPLQ7Z5K2 1190 aa18.59■□□□□ 0.57
NEDD8-208ENST00000560427 PRAM1Q96QH2 718 aa18.59■□□□□ 0.57
NEDD8-208ENST00000560427 SLAIN2Q9P270 581 aa18.59■□□□□ 0.57
NEDD8-208ENST00000560427 MST1RQ04912 1400 aa18.58■□□□□ 0.57
NEDD8-208ENST00000560427 PIP4K2BP78356 416 aa18.58■□□□□ 0.56
NEDD8-208ENST00000560427 POGKQ9P215 609 aa18.58■□□□□ 0.56
NEDD8-208ENST00000560427 TRAK1Q9UPV9 953 aa18.58■□□□□ 0.56
NEDD8-208ENST00000560427 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
NEDD8-208ENST00000560427 NBPF1Q3BBV0 1214 aa18.57■□□□□ 0.56
NEDD8-208ENST00000560427 NBPF8Q3BBV2 869 aa18.56■□□□□ 0.56
NEDD8-208ENST00000560427 ROBO1Q9Y6N7 1651 aa18.56■□□□□ 0.56
NEDD8-208ENST00000560427 EIF3AQ14152 1382 aaKnown RBP18.55■□□□□ 0.56
NEDD8-208ENST00000560427 C1orf167Q5SNV9 1468 aa18.52■□□□□ 0.56
NEDD8-208ENST00000560427 FMN2Q9NZ56 1722 aa18.52■□□□□ 0.56
NEDD8-208ENST00000560427 ANKARQ7Z5J8 1434 aa18.5■□□□□ 0.55
NEDD8-208ENST00000560427 AHDC1Q5TGY3 1603 aaPredicted RBP18.5■□□□□ 0.55
NEDD8-208ENST00000560427 CENPJQ9HC77 1338 aaPredicted RBP18.49■□□□□ 0.55
NEDD8-208ENST00000560427 SAFB2Q14151 953 aaKnown RBP eCLIP18.49■□□□□ 0.55
NEDD8-208ENST00000560427 BRINP3Q76B58 766 aa18.49■□□□□ 0.55
NEDD8-208ENST00000560427 CARD11Q9BXL7 1154 aa18.49■□□□□ 0.55
NEDD8-208ENST00000560427 HSPA1LP34931 641 aa18.47■□□□□ 0.55
NEDD8-208ENST00000560427 TULP4Q9NRJ4 1543 aa18.47■□□□□ 0.55
NEDD8-208ENST00000560427 MINK1Q8N4C8 1332 aaPredicted RBP18.47■□□□□ 0.55
NEDD8-208ENST00000560427 QRICH2Q9H0J4 1663 aa18.46■□□□□ 0.55
NEDD8-208ENST00000560427 NHSL1Q5SYE7 1610 aa18.45■□□□□ 0.54
NEDD8-208ENST00000560427 SBNO2Q9Y2G9 1366 aa18.45■□□□□ 0.54
NEDD8-208ENST00000560427 KIF1AQ12756 1690 aa18.45■□□□□ 0.54
NEDD8-208ENST00000560427 WASLO00401 505 aaPredicted RBP18.45■□□□□ 0.54
NEDD8-208ENST00000560427 PHLPP1O60346 1717 aa18.43■□□□□ 0.54
NEDD8-208ENST00000560427 HIRIP3Q9BW71 556 aaPredicted RBP18.43■□□□□ 0.54
NEDD8-208ENST00000560427 COL16A1Q07092 1604 aaPredicted RBP18.42■□□□□ 0.54
NEDD8-208ENST00000560427 USP32Q8NFA0 1604 aa18.41■□□□□ 0.54
NEDD8-208ENST00000560427 ESCO1Q5FWF5 840 aa18.41■□□□□ 0.54
NEDD8-208ENST00000560427 ORAI2Q96SN7 254 aa18.41■□□□□ 0.54
NEDD8-208ENST00000560427 ATP7BP35670 1465 aa18.4■□□□□ 0.54
NEDD8-208ENST00000560427 NPHP3Q7Z494 1330 aa18.4■□□□□ 0.54
NEDD8-208ENST00000560427 SLC24A1O60721 1099 aa18.39■□□□□ 0.53
NEDD8-208ENST00000560427 ITSN1Q15811 1721 aa18.38■□□□□ 0.53
NEDD8-208ENST00000560427 NUTM2FA1L443 756 aa18.38■□□□□ 0.53
NEDD8-208ENST00000560427 EVC2Q86UK5 1308 aa18.38■□□□□ 0.53
NEDD8-208ENST00000560427 CDK19Q9BWU1 502 aa18.37■□□□□ 0.53
NEDD8-208ENST00000560427 USP47Q96K76 1375 aa18.37■□□□□ 0.53
NEDD8-208ENST00000560427 JCADQ9P266 1359 aa18.37■□□□□ 0.53
NEDD8-208ENST00000560427 SOS2Q07890 1332 aaPredicted RBP18.36■□□□□ 0.53
NEDD8-208ENST00000560427 TOPAZ1Q8N9V7 1692 aa18.36■□□□□ 0.53
NEDD8-208ENST00000560427 PRR36Q9H6K5 1346 aa18.36■□□□□ 0.53
NEDD8-208ENST00000560427 PHF8Q9UPP1 1060 aa18.36■□□□□ 0.53
NEDD8-208ENST00000560427 PXDNQ92626 1479 aa18.35■□□□□ 0.53
NEDD8-208ENST00000560427 NUDT16Q96DE0 195 aaKnown RBP18.34■□□□□ 0.53
NEDD8-208ENST00000560427 RGPD8O14715 1765 aaPredicted RBP18.34■□□□□ 0.53
NEDD8-208ENST00000560427 SHPRHQ149N8 1683 aa18.34■□□□□ 0.53
NEDD8-208ENST00000560427 SRPK2P78362 688 aaKnown RBP18.33■□□□□ 0.52
NEDD8-208ENST00000560427 LRRC59Q96AG4 307 aaKnown RBP18.33■□□□□ 0.52
NEDD8-208ENST00000560427 CCDC61Q9Y6R9 512 aa18.33■□□□□ 0.52
NEDD8-208ENST00000560427 ATAD2Q6PL18 1390 aa18.32■□□□□ 0.52
NEDD8-208ENST00000560427 FOXO3O43524 673 aa18.32■□□□□ 0.52
NEDD8-208ENST00000560427 ST20-MTHFSA0A0A6YYL1 179 aa18.31■□□□□ 0.52
NEDD8-208ENST00000560427 SPATA31A6Q5VVP1 1343 aa18.3■□□□□ 0.52
NEDD8-208ENST00000560427 PUS7Q96PZ0 661 aaKnown RBP18.3■□□□□ 0.52
NEDD8-208ENST00000560427 POLR3AO14802 1390 aaPredicted RBP18.3■□□□□ 0.52
NEDD8-208ENST00000560427 PLEKHG3A1L390 1219 aa18.29■□□□□ 0.52
NEDD8-208ENST00000560427 PSME1Q06323 249 aa18.29■□□□□ 0.52
NEDD8-208ENST00000560427 DDX17Q92841 729 aaKnown RBP18.29■□□□□ 0.52
NEDD8-208ENST00000560427 TESK2Q96S53 571 aa18.29■□□□□ 0.52
NEDD8-208ENST00000560427 PPIP5K1Q6PFW1 1433 aa18.29■□□□□ 0.52
NEDD8-208ENST00000560427 SBNO1A3KN83 1393 aa18.29■□□□□ 0.52
NEDD8-208ENST00000560427 CABP2Q9NPB3 220 aa18.28■□□□□ 0.52
NEDD8-208ENST00000560427 NGDNQ8NEJ9 315 aaKnown RBP18.27■□□□□ 0.52
NEDD8-208ENST00000560427 PMFBP1Q8TBY8 1022 aa18.27■□□□□ 0.52
NEDD8-208ENST00000560427 PNPLA6Q8IY17 1366 aa18.27■□□□□ 0.51
NEDD8-208ENST00000560427 COL22A1Q8NFW1 1626 aaPredicted RBP18.27■□□□□ 0.51
NEDD8-208ENST00000560427 KRT28Q7Z3Y7 464 aa18.26■□□□□ 0.51
NEDD8-208ENST00000560427 MED1Q15648 1581 aaPredicted RBP18.25■□□□□ 0.51
NEDD8-208ENST00000560427 TNS3Q68CZ2 1445 aa18.25■□□□□ 0.51
NEDD8-208ENST00000560427 EIF4G2P78344 907 aaKnown RBP eCLIP18.25■□□□□ 0.51
NEDD8-208ENST00000560427 BRD4O60885 1362 aaPredicted RBP18.25■□□□□ 0.51
NEDD8-208ENST00000560427 NINLQ9Y2I6 1382 aa18.25■□□□□ 0.51
NEDD8-208ENST00000560427 SPATA31A3Q5VYP0 1347 aa18.24■□□□□ 0.51
NEDD8-208ENST00000560427 TMF1P82094 1093 aa18.24■□□□□ 0.51
NEDD8-208ENST00000560427 ARHGEF10O15013 1369 aa18.24■□□□□ 0.51
NEDD8-208ENST00000560427 ACEP12821 1306 aa18.23■□□□□ 0.51
NEDD8-208ENST00000560427 TRPM3Q9HCF6 1732 aaPredicted RBP18.23■□□□□ 0.51
NEDD8-208ENST00000560427 XPCQ01831 940 aaPredicted RBP18.23■□□□□ 0.51
NEDD8-208ENST00000560427 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
NEDD8-208ENST00000560427 CABP1Q9NZU7 370 aa18.21■□□□□ 0.51
NEDD8-208ENST00000560427 DISP3Q9P2K9 1392 aa18.19■□□□□ 0.5
NEDD8-208ENST00000560427 ALS2Q96Q42 1657 aa18.19■□□□□ 0.5
NEDD8-208ENST00000560427 USP6P35125 1406 aa18.19■□□□□ 0.5
NEDD8-208ENST00000560427 ZNF692Q9BU19 519 aaPredicted RBP18.19■□□□□ 0.5
NEDD8-208ENST00000560427 LRP6O75581 1613 aa18.19■□□□□ 0.5
NEDD8-208ENST00000560427 CPSF1Q10570 1443 aaKnown RBP18.18■□□□□ 0.5
NEDD8-208ENST00000560427 HSPA5P11021 654 aaKnown RBP18.17■□□□□ 0.5
NEDD8-208ENST00000560427 AKAP12Q02952 1782 aa18.17■□□□□ 0.5
NEDD8-208ENST00000560427 SSH2Q76I76 1423 aa18.15■□□□□ 0.5
NEDD8-208ENST00000560427 CD163L1Q9NR16 1453 aa18.14■□□□□ 0.5
NEDD8-208ENST00000560427 NRKQ7Z2Y5 1582 aa18.14■□□□□ 0.49
NEDD8-208ENST00000560427 TERF2IPQ9NYB0 399 aa18.14■□□□□ 0.49
NEDD8-208ENST00000560427 MON2Q7Z3U7 1717 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms