RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 C14orf37Q86TY3 774 aa30.84■■■□□ 2.53
SNX1-206ENST00000559389 QRICH2Q9H0J4 1663 aa30.84■■■□□ 2.53
SNX1-206ENST00000559389 EIF3AQ14152 1382 aaKnown RBP30.82■■■□□ 2.52
SNX1-206ENST00000559389 C19orf44Q9H6X5 657 aa30.81■■■□□ 2.52
SNX1-206ENST00000559389 POGKQ9P215 609 aa30.81■■■□□ 2.52
SNX1-206ENST00000559389 SAFB2Q14151 953 aaKnown RBP eCLIP30.77■■■□□ 2.52
SNX1-206ENST00000559389 CENPJQ9HC77 1338 aaPredicted RBP30.76■■■□□ 2.52
SNX1-206ENST00000559389 FMN2Q9NZ56 1722 aa30.76■■■□□ 2.52
SNX1-206ENST00000559389 CADPS2Q86UW7 1296 aa30.73■■■□□ 2.51
SNX1-206ENST00000559389 USP47Q96K76 1375 aa30.73■■■□□ 2.51
SNX1-206ENST00000559389 MST1RQ04912 1400 aa30.73■■■□□ 2.51
SNX1-206ENST00000559389 UBAP1LF5GYI3 381 aa30.71■■■□□ 2.51
SNX1-206ENST00000559389 ATF3P18847 181 aa30.71■■■□□ 2.51
SNX1-206ENST00000559389 MINK1Q8N4C8 1332 aaPredicted RBP30.71■■■□□ 2.51
SNX1-206ENST00000559389 TOM1O60784 492 aa30.7■■■□□ 2.51
SNX1-206ENST00000559389 SBNO2Q9Y2G9 1366 aa30.69■■■□□ 2.5
SNX1-206ENST00000559389 TULP4Q9NRJ4 1543 aa30.68■■■□□ 2.5
SNX1-206ENST00000559389 HIRIP3Q9BW71 556 aaPredicted RBP30.66■■■□□ 2.5
SNX1-206ENST00000559389 USP32Q8NFA0 1604 aa30.65■■■□□ 2.5
SNX1-206ENST00000559389 C1orf167Q5SNV9 1468 aa30.64■■■□□ 2.5
SNX1-206ENST00000559389 ROBO1Q9Y6N7 1651 aa30.64■■■□□ 2.5
SNX1-206ENST00000559389 ANKARQ7Z5J8 1434 aa30.62■■■□□ 2.49
SNX1-206ENST00000559389 FBXO41Q8TF61 875 aa30.61■■■□□ 2.49
SNX1-206ENST00000559389 SLAIN2Q9P270 581 aa30.61■■■□□ 2.49
SNX1-206ENST00000559389 WASLO00401 505 aaPredicted RBP30.6■■■□□ 2.49
SNX1-206ENST00000559389 ST20-MTHFSA0A0A6YYL1 179 aa30.59■■■□□ 2.49
SNX1-206ENST00000559389 ATP7BP35670 1465 aa30.58■■■□□ 2.49
SNX1-206ENST00000559389 TOPAZ1Q8N9V7 1692 aa30.58■■■□□ 2.49
SNX1-206ENST00000559389 RGPD8O14715 1765 aaPredicted RBP30.56■■■□□ 2.48
SNX1-206ENST00000559389 PIP4K2BP78356 416 aa30.56■■■□□ 2.48
SNX1-206ENST00000559389 TESK2Q96S53 571 aa30.56■■■□□ 2.48
SNX1-206ENST00000559389 ITSN1Q15811 1721 aa30.56■■■□□ 2.48
SNX1-206ENST00000559389 KIF1AQ12756 1690 aa30.55■■■□□ 2.48
SNX1-206ENST00000559389 ZEB1P37275 1124 aaPredicted RBP30.54■■■□□ 2.48
SNX1-206ENST00000559389 EVC2Q86UK5 1308 aa30.53■■■□□ 2.48
SNX1-206ENST00000559389 SCAF1Q9H7N4 1312 aaKnown RBP30.53■■■□□ 2.48
SNX1-206ENST00000559389 NUTM2FA1L443 756 aa30.53■■■□□ 2.48
SNX1-206ENST00000559389 EIF4G2P78344 907 aaKnown RBP eCLIP30.53■■■□□ 2.48
SNX1-206ENST00000559389 PRR36Q9H6K5 1346 aa30.52■■■□□ 2.48
SNX1-206ENST00000559389 CDK19Q9BWU1 502 aa30.52■■■□□ 2.48
SNX1-206ENST00000559389 NHSL1Q5SYE7 1610 aa30.51■■■□□ 2.48
SNX1-206ENST00000559389 BRINP3Q76B58 766 aa30.51■■■□□ 2.47
SNX1-206ENST00000559389 AHDC1Q5TGY3 1603 aaPredicted RBP30.51■■■□□ 2.47
SNX1-206ENST00000559389 HSPA5P11021 654 aaKnown RBP30.49■■■□□ 2.47
SNX1-206ENST00000559389 ORAI2Q96SN7 254 aa30.47■■■□□ 2.47
SNX1-206ENST00000559389 SRPK2P78362 688 aaKnown RBP30.46■■■□□ 2.47
SNX1-206ENST00000559389 DISP3Q9P2K9 1392 aa30.45■■■□□ 2.47
SNX1-206ENST00000559389 SLC24A1O60721 1099 aa30.44■■■□□ 2.46
SNX1-206ENST00000559389 ESCO1Q5FWF5 840 aa30.44■■■□□ 2.46
SNX1-206ENST00000559389 CABP2Q9NPB3 220 aa30.44■■■□□ 2.46
SNX1-206ENST00000559389 PHLPP1O60346 1717 aa30.43■■■□□ 2.46
SNX1-206ENST00000559389 NUDT16Q96DE0 195 aaKnown RBP30.43■■■□□ 2.46
SNX1-206ENST00000559389 ATAD2Q6PL18 1390 aa30.42■■■□□ 2.46
SNX1-206ENST00000559389 COL16A1Q07092 1604 aaPredicted RBP30.41■■■□□ 2.46
SNX1-206ENST00000559389 TMF1P82094 1093 aa30.4■■■□□ 2.46
SNX1-206ENST00000559389 PHF8Q9UPP1 1060 aa30.39■■■□□ 2.46
SNX1-206ENST00000559389 PPIP5K1Q6PFW1 1433 aa30.39■■■□□ 2.45
SNX1-206ENST00000559389 CCDC61Q9Y6R9 512 aa30.38■■■□□ 2.45
SNX1-206ENST00000559389 PUS7Q96PZ0 661 aaKnown RBP30.37■■■□□ 2.45
SNX1-206ENST00000559389 PXDNQ92626 1479 aa30.36■■■□□ 2.45
SNX1-206ENST00000559389 NPHP3Q7Z494 1330 aa30.34■■■□□ 2.45
SNX1-206ENST00000559389 POLR3AO14802 1390 aaPredicted RBP30.33■■■□□ 2.45
SNX1-206ENST00000559389 MYOM1P52179 1685 aa30.33■■■□□ 2.45
SNX1-206ENST00000559389 HSPA1LP34931 641 aa30.32■■■□□ 2.44
SNX1-206ENST00000559389 PMFBP1Q8TBY8 1022 aa30.32■■■□□ 2.44
SNX1-206ENST00000559389 DDX17Q92841 729 aaKnown RBP30.32■■■□□ 2.44
SNX1-206ENST00000559389 PLEKHG3A1L390 1219 aa30.31■■■□□ 2.44
SNX1-206ENST00000559389 ILDR1Q86SU0 546 aaPredicted RBP30.31■■■□□ 2.44
SNX1-206ENST00000559389 SOS2Q07890 1332 aaPredicted RBP30.3■■■□□ 2.44
SNX1-206ENST00000559389 FOXO3O43524 673 aa30.3■■■□□ 2.44
SNX1-206ENST00000559389 CDCA8Q53HL2 280 aa30.3■■■□□ 2.44
SNX1-206ENST00000559389 AKAP12Q02952 1782 aa30.3■■■□□ 2.44
SNX1-206ENST00000559389 TRPM3Q9HCF6 1732 aaPredicted RBP30.3■■■□□ 2.44
SNX1-206ENST00000559389 NINLQ9Y2I6 1382 aa30.28■■■□□ 2.44
SNX1-206ENST00000559389 CABP1Q9NZU7 370 aa30.27■■■□□ 2.44
SNX1-206ENST00000559389 CD163L1Q9NR16 1453 aa30.25■■■□□ 2.43
SNX1-206ENST00000559389 ACEP12821 1306 aa30.25■■■□□ 2.43
SNX1-206ENST00000559389 MON2Q7Z3U7 1717 aa30.25■■■□□ 2.43
SNX1-206ENST00000559389 NGDNQ8NEJ9 315 aaKnown RBP30.25■■■□□ 2.43
SNX1-206ENST00000559389 NRKQ7Z2Y5 1582 aa30.24■■■□□ 2.43
SNX1-206ENST00000559389 CPSF1Q10570 1443 aaKnown RBP30.23■■■□□ 2.43
SNX1-206ENST00000559389 XPCQ01831 940 aaPredicted RBP30.23■■■□□ 2.43
SNX1-206ENST00000559389 SHPRHQ149N8 1683 aa30.23■■■□□ 2.43
SNX1-206ENST00000559389 USP6P35125 1406 aa30.22■■■□□ 2.43
SNX1-206ENST00000559389 C11orf95C9JLR9 678 aaPredicted RBP30.21■■■□□ 2.43
SNX1-206ENST00000559389 ALS2Q96Q42 1657 aa30.2■■■□□ 2.43
SNX1-206ENST00000559389 SBNO1A3KN83 1393 aa30.2■■■□□ 2.43
SNX1-206ENST00000559389 KRT28Q7Z3Y7 464 aa30.2■■■□□ 2.43
SNX1-206ENST00000559389 TNS3Q68CZ2 1445 aa30.2■■■□□ 2.42
SNX1-206ENST00000559389 PSME1Q06323 249 aa30.19■■■□□ 2.42
SNX1-206ENST00000559389 TMC1Q8TDI8 760 aa30.19■■■□□ 2.42
SNX1-206ENST00000559389 SLC12A5Q9H2X9 1139 aa30.18■■■□□ 2.42
SNX1-206ENST00000559389 COL22A1Q8NFW1 1626 aaPredicted RBP30.17■■■□□ 2.42
SNX1-206ENST00000559389 KIF7Q2M1P5 1343 aa30.17■■■□□ 2.42
SNX1-206ENST00000559389 A0A1W2PP64 1363 aa30.16■■■□□ 2.42
SNX1-206ENST00000559389 JCADQ9P266 1359 aa30.16■■■□□ 2.42
SNX1-206ENST00000559389 BRD4O60885 1362 aaPredicted RBP30.15■■■□□ 2.42
SNX1-206ENST00000559389 PNPLA6Q8IY17 1366 aa30.15■■■□□ 2.42
SNX1-206ENST00000559389 ANKRD36BQ8N2N9 1353 aa30.15■■■□□ 2.42
SNX1-206ENST00000559389 SSH2Q76I76 1423 aa30.15■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms