RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 AHDC1Q5TGY3 1603 aaPredicted RBP18.29■□□□□ 0.52
SMAD3-208ENST00000558827 ESCO1Q5FWF5 840 aa18.28■□□□□ 0.52
SMAD3-208ENST00000558827 ABCC11Q96J66 1382 aa18.28■□□□□ 0.52
SMAD3-208ENST00000558827 XPCQ01831 940 aaPredicted RBP18.27■□□□□ 0.52
SMAD3-208ENST00000558827 DHX57Q6P158 1386 aaKnown RBP18.27■□□□□ 0.51
SMAD3-208ENST00000558827 TRAK1Q9UPV9 953 aa18.26■□□□□ 0.51
SMAD3-208ENST00000558827 LRP6O75581 1613 aa18.26■□□□□ 0.51
SMAD3-208ENST00000558827 MYOM2P54296 1465 aa18.26■□□□□ 0.51
SMAD3-208ENST00000558827 PRAM1Q96QH2 718 aa18.25■□□□□ 0.51
SMAD3-208ENST00000558827 NRXN1Q9ULB1 1477 aa18.25■□□□□ 0.51
SMAD3-208ENST00000558827 PRAG1Q86YV5 1406 aa18.24■□□□□ 0.51
SMAD3-208ENST00000558827 LRRC59Q96AG4 307 aaKnown RBP18.24■□□□□ 0.51
SMAD3-208ENST00000558827 POGKQ9P215 609 aa18.24■□□□□ 0.51
SMAD3-208ENST00000558827 TECPR2O15040 1411 aa18.23■□□□□ 0.51
SMAD3-208ENST00000558827 FOXO3O43524 673 aa18.23■□□□□ 0.51
SMAD3-208ENST00000558827 NHSL1Q5SYE7 1610 aa18.23■□□□□ 0.51
SMAD3-208ENST00000558827 SPATA31A6Q5VVP1 1343 aa18.23■□□□□ 0.51
SMAD3-208ENST00000558827 SIN3AQ96ST3 1273 aa18.21■□□□□ 0.51
SMAD3-208ENST00000558827 HIRIP3Q9BW71 556 aaPredicted RBP18.21■□□□□ 0.51
SMAD3-208ENST00000558827 KNDC1Q76NI1 1749 aa18.2■□□□□ 0.5
SMAD3-208ENST00000558827 PLEKHG5O94827 1062 aa18.2■□□□□ 0.5
SMAD3-208ENST00000558827 ADAMTS2O95450 1211 aa18.2■□□□□ 0.5
SMAD3-208ENST00000558827 MINK1Q8N4C8 1332 aaPredicted RBP18.2■□□□□ 0.5
SMAD3-208ENST00000558827 SHPRHQ149N8 1683 aa18.19■□□□□ 0.5
SMAD3-208ENST00000558827 NEUROD1Q13562 356 aa18.19■□□□□ 0.5
SMAD3-208ENST00000558827 PNPLA6Q8IY17 1366 aa18.18■□□□□ 0.5
SMAD3-208ENST00000558827 CDC42BPGQ6DT37 1551 aa18.18■□□□□ 0.5
SMAD3-208ENST00000558827 SIRT1Q96EB6 747 aa18.18■□□□□ 0.5
SMAD3-208ENST00000558827 C8orf37Q96NL8 207 aa18.17■□□□□ 0.5
SMAD3-208ENST00000558827 SOS2Q07890 1332 aaPredicted RBP18.17■□□□□ 0.5
SMAD3-208ENST00000558827 LAMC1P11047 1609 aa18.16■□□□□ 0.5
SMAD3-208ENST00000558827 RGPD8O14715 1765 aaPredicted RBP18.15■□□□□ 0.5
SMAD3-208ENST00000558827 ADGRB1O14514 1584 aa18.15■□□□□ 0.5
SMAD3-208ENST00000558827 NBPF1Q3BBV0 1214 aa18.14■□□□□ 0.49
SMAD3-208ENST00000558827 PMFBP1Q8TBY8 1022 aa18.14■□□□□ 0.49
SMAD3-208ENST00000558827 AFF2P51816 1311 aa18.14■□□□□ 0.49
SMAD3-208ENST00000558827 NPHP3Q7Z494 1330 aa18.14■□□□□ 0.49
SMAD3-208ENST00000558827 FMN2Q9NZ56 1722 aa18.14■□□□□ 0.49
SMAD3-208ENST00000558827 PHF8Q9UPP1 1060 aa18.13■□□□□ 0.49
SMAD3-208ENST00000558827 KRT28Q7Z3Y7 464 aa18.12■□□□□ 0.49
SMAD3-208ENST00000558827 L3MBTL2Q969R5 705 aa18.12■□□□□ 0.49
SMAD3-208ENST00000558827 NGLY1Q96IV0 654 aa18.12■□□□□ 0.49
SMAD3-208ENST00000558827 ZNF772Q68DY9 489 aaPredicted RBP18.11■□□□□ 0.49
SMAD3-208ENST00000558827 STAC3Q96MF2 364 aa18.11■□□□□ 0.49
SMAD3-208ENST00000558827 LMOD2Q6P5Q4 547 aa18.1■□□□□ 0.49
SMAD3-208ENST00000558827 DLC1Q96QB1 1528 aa18.09■□□□□ 0.49
SMAD3-208ENST00000558827 PXDNQ92626 1479 aa18.09■□□□□ 0.49
SMAD3-208ENST00000558827 PRR36Q9H6K5 1346 aa18.07■□□□□ 0.48
SMAD3-208ENST00000558827 WASLO00401 505 aaPredicted RBP18.07■□□□□ 0.48
SMAD3-208ENST00000558827 PSME1Q06323 249 aa18.07■□□□□ 0.48
SMAD3-208ENST00000558827 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
SMAD3-208ENST00000558827 CABLES1Q8TDN4 633 aa18.06■□□□□ 0.48
SMAD3-208ENST00000558827 QTRT2Q9H974 415 aaKnown RBP18.06■□□□□ 0.48
SMAD3-208ENST00000558827 RXRBP28702 533 aa18.05■□□□□ 0.48
SMAD3-208ENST00000558827 SPATA31A3Q5VYP0 1347 aa18.04■□□□□ 0.48
SMAD3-208ENST00000558827 USP32Q8NFA0 1604 aa18.04■□□□□ 0.48
SMAD3-208ENST00000558827 CDK19Q9BWU1 502 aa18.03■□□□□ 0.48
SMAD3-208ENST00000558827 USP21Q9UK80 565 aa18.03■□□□□ 0.48
SMAD3-208ENST00000558827 ARHGEF28Q8N1W1 1705 aaKnown RBP18.03■□□□□ 0.48
SMAD3-208ENST00000558827 KIF1AQ12756 1690 aa18.02■□□□□ 0.47
SMAD3-208ENST00000558827 HAP1P54257 671 aaPredicted RBP18.01■□□□□ 0.47
SMAD3-208ENST00000558827 NGDNQ8NEJ9 315 aaKnown RBP18.01■□□□□ 0.47
SMAD3-208ENST00000558827 NUDT16Q96DE0 195 aaKnown RBP18.01■□□□□ 0.47
SMAD3-208ENST00000558827 ANKARQ7Z5J8 1434 aa17.99■□□□□ 0.47
SMAD3-208ENST00000558827 PAK3O75914 559 aaPredicted RBP17.99■□□□□ 0.47
SMAD3-208ENST00000558827 ADGRB2O60241 1585 aa17.99■□□□□ 0.47
SMAD3-208ENST00000558827 COL22A1Q8NFW1 1626 aaPredicted RBP17.98■□□□□ 0.47
SMAD3-208ENST00000558827 RBM6P78332 1123 aaKnown RBP17.97■□□□□ 0.47
SMAD3-208ENST00000558827 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
SMAD3-208ENST00000558827 KIAA1210Q9ULL0 1709 aa17.97■□□□□ 0.47
SMAD3-208ENST00000558827 TULP4Q9NRJ4 1543 aa17.97■□□□□ 0.47
SMAD3-208ENST00000558827 TNS3Q68CZ2 1445 aa17.97■□□□□ 0.47
SMAD3-208ENST00000558827 FNBP4Q8N3X1 1017 aaPredicted RBP17.96■□□□□ 0.47
SMAD3-208ENST00000558827 CABP2Q9NPB3 220 aa17.96■□□□□ 0.47
SMAD3-208ENST00000558827 CENPJQ9HC77 1338 aaPredicted RBP17.96■□□□□ 0.46
SMAD3-208ENST00000558827 GPRASP1Q5JY77 1395 aa17.95■□□□□ 0.46
SMAD3-208ENST00000558827 SRPK2P78362 688 aaKnown RBP17.95■□□□□ 0.46
SMAD3-208ENST00000558827 NUTM2GQ5VZR2 741 aa17.95■□□□□ 0.46
SMAD3-208ENST00000558827 SBNO1A3KN83 1393 aa17.94■□□□□ 0.46
SMAD3-208ENST00000558827 EIF3AQ14152 1382 aaKnown RBP17.94■□□□□ 0.46
SMAD3-208ENST00000558827 TRPC5Q9UL62 973 aaPredicted RBP17.94■□□□□ 0.46
SMAD3-208ENST00000558827 ATP7BP35670 1465 aa17.92■□□□□ 0.46
SMAD3-208ENST00000558827 ROCK2O75116 1388 aaKnown RBP17.91■□□□□ 0.46
SMAD3-208ENST00000558827 MARF1Q9Y4F3 1742 aaKnown RBP17.91■□□□□ 0.46
SMAD3-208ENST00000558827 ACEP12821 1306 aa17.91■□□□□ 0.46
SMAD3-208ENST00000558827 RGS12O14924 1447 aa17.9■□□□□ 0.46
SMAD3-208ENST00000558827 BCL9LQ86UU0 1499 aa17.9■□□□□ 0.46
SMAD3-208ENST00000558827 CCDC61Q9Y6R9 512 aa17.9■□□□□ 0.46
SMAD3-208ENST00000558827 ARHGEF10O15013 1369 aa17.9■□□□□ 0.46
SMAD3-208ENST00000558827 TONSLQ96HA7 1378 aa17.9■□□□□ 0.46
SMAD3-208ENST00000558827 FAM83GA6ND36 823 aa17.89■□□□□ 0.45
SMAD3-208ENST00000558827 UPF1Q92900 1129 aaKnown RBP eCLIP17.89■□□□□ 0.45
SMAD3-208ENST00000558827 TRPM1Q7Z4N2 1603 aa17.89■□□□□ 0.45
SMAD3-208ENST00000558827 TRPM3Q9HCF6 1732 aaPredicted RBP17.89■□□□□ 0.45
SMAD3-208ENST00000558827 ATRNO75882 1429 aa17.89■□□□□ 0.45
SMAD3-208ENST00000558827 UNC5CLQ8IV45 518 aa17.88■□□□□ 0.45
SMAD3-208ENST00000558827 CCDC9Q9Y3X0 531 aaKnown RBP17.88■□□□□ 0.45
SMAD3-208ENST00000558827 QRICH2Q9H0J4 1663 aa17.87■□□□□ 0.45
SMAD3-208ENST00000558827 GJD4Q96KN9 370 aaPredicted RBP17.87■□□□□ 0.45
SMAD3-208ENST00000558827 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms