RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ST20-MTHFSA0A0A6YYL1 179 aa13.52□□□□□ -0.25
CUX1-216ENST00000558469 SAFB2Q14151 953 aaKnown RBP eCLIP13.52□□□□□ -0.25
CUX1-216ENST00000558469 WAPLQ7Z5K2 1190 aa13.52□□□□□ -0.25
CUX1-216ENST00000558469 PRAM1Q96QH2 718 aa13.52□□□□□ -0.25
CUX1-216ENST00000558469 POGKQ9P215 609 aa13.52□□□□□ -0.25
CUX1-216ENST00000558469 ROBO2Q9HCK4 1378 aa13.52□□□□□ -0.25
CUX1-216ENST00000558469 XIRP1Q702N8 1843 aaKnown RBP13.51□□□□□ -0.25
CUX1-216ENST00000558469 PTCH1Q13635 1447 aa13.51□□□□□ -0.25
CUX1-216ENST00000558469 ZNF335Q9H4Z2 1342 aaPredicted RBP13.51□□□□□ -0.25
CUX1-216ENST00000558469 CENPJQ9HC77 1338 aaPredicted RBP13.51□□□□□ -0.25
CUX1-216ENST00000558469 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.5□□□□□ -0.25
CUX1-216ENST00000558469 FAM135BQ49AJ0 1406 aa13.5□□□□□ -0.25
CUX1-216ENST00000558469 PLEKHH1Q9ULM0 1364 aa13.5□□□□□ -0.25
CUX1-216ENST00000558469 SLC4A2P04920 1241 aa13.5□□□□□ -0.25
CUX1-216ENST00000558469 SIRT1Q96EB6 747 aa13.5□□□□□ -0.25
CUX1-216ENST00000558469 NKTRP30414 1462 aaKnown RBP13.49□□□□□ -0.25
CUX1-216ENST00000558469 PROSER2Q86WR7 435 aaPredicted RBP13.49□□□□□ -0.25
CUX1-216ENST00000558469 NALCNQ8IZF0 1738 aa13.48□□□□□ -0.25
CUX1-216ENST00000558469 MINK1Q8N4C8 1332 aaPredicted RBP13.47□□□□□ -0.25
CUX1-216ENST00000558469 RBM33Q96EV2 1170 aaKnown RBP13.47□□□□□ -0.25
CUX1-216ENST00000558469 TESK2Q96S53 571 aa13.46□□□□□ -0.25
CUX1-216ENST00000558469 U3KPZ7 1027 aaPredicted RBP13.46□□□□□ -0.25
CUX1-216ENST00000558469 LRRC7Q96NW7 1537 aa13.44□□□□□ -0.26
CUX1-216ENST00000558469 LTBP4Q8N2S1 1624 aa13.44□□□□□ -0.26
CUX1-216ENST00000558469 C14orf37Q86TY3 774 aa13.44□□□□□ -0.26
CUX1-216ENST00000558469 RGPD8O14715 1765 aaPredicted RBP13.44□□□□□ -0.26
CUX1-216ENST00000558469 SBNO2Q9Y2G9 1366 aa13.44□□□□□ -0.26
CUX1-216ENST00000558469 ADGRB2O60241 1585 aa13.43□□□□□ -0.26
CUX1-216ENST00000558469 TMF1P82094 1093 aa13.43□□□□□ -0.26
CUX1-216ENST00000558469 TULP4Q9NRJ4 1543 aa13.43□□□□□ -0.26
CUX1-216ENST00000558469 TMEM94Q12767 1356 aa13.43□□□□□ -0.26
CUX1-216ENST00000558469 ZNF316A6NFI3 1004 aaPredicted RBP13.42□□□□□ -0.26
CUX1-216ENST00000558469 SLC24A1O60721 1099 aa13.42□□□□□ -0.26
CUX1-216ENST00000558469 DISP3Q9P2K9 1392 aa13.42□□□□□ -0.26
CUX1-216ENST00000558469 FMN2Q9NZ56 1722 aa13.42□□□□□ -0.26
CUX1-216ENST00000558469 EVC2Q86UK5 1308 aa13.41□□□□□ -0.26
CUX1-216ENST00000558469 ADGRL3Q9HAR2 1447 aa13.41□□□□□ -0.26
CUX1-216ENST00000558469 C11orf95C9JLR9 678 aaPredicted RBP13.41□□□□□ -0.26
CUX1-216ENST00000558469 NCOA3Q9Y6Q9 1424 aa13.4□□□□□ -0.26
CUX1-216ENST00000558469 WASLO00401 505 aaPredicted RBP13.4□□□□□ -0.26
CUX1-216ENST00000558469 CDK19Q9BWU1 502 aa13.4□□□□□ -0.26
CUX1-216ENST00000558469 CDC42BPGQ6DT37 1551 aa13.4□□□□□ -0.26
CUX1-216ENST00000558469 SRPK2P78362 688 aaKnown RBP13.39□□□□□ -0.27
CUX1-216ENST00000558469 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
CUX1-216ENST00000558469 C19orf44Q9H6X5 657 aa13.39□□□□□ -0.27
CUX1-216ENST00000558469 CDCA8Q53HL2 280 aa13.38□□□□□ -0.27
CUX1-216ENST00000558469 CABP2Q9NPB3 220 aa13.38□□□□□ -0.27
CUX1-216ENST00000558469 ITSN1Q15811 1721 aa13.38□□□□□ -0.27
CUX1-216ENST00000558469 USP32Q8NFA0 1604 aa13.38□□□□□ -0.27
CUX1-216ENST00000558469 KIF7Q2M1P5 1343 aa13.38□□□□□ -0.27
CUX1-216ENST00000558469 MSH6P52701 1360 aa13.37□□□□□ -0.27
CUX1-216ENST00000558469 MYOM1P52179 1685 aa13.37□□□□□ -0.27
CUX1-216ENST00000558469 WASHC2AQ641Q2 1341 aa13.37□□□□□ -0.27
CUX1-216ENST00000558469 CCDC7Q96M83 1385 aa13.36□□□□□ -0.27
CUX1-216ENST00000558469 NUTM2FA1L443 756 aa13.36□□□□□ -0.27
CUX1-216ENST00000558469 ATF3P18847 181 aa13.36□□□□□ -0.27
CUX1-216ENST00000558469 TOPAZ1Q8N9V7 1692 aa13.35□□□□□ -0.27
CUX1-216ENST00000558469 DCCP43146 1447 aa13.34□□□□□ -0.27
CUX1-216ENST00000558469 NUDT16Q96DE0 195 aaKnown RBP13.34□□□□□ -0.27
CUX1-216ENST00000558469 PUS7Q96PZ0 661 aaKnown RBP13.34□□□□□ -0.27
CUX1-216ENST00000558469 CADPS2Q86UW7 1296 aa13.33□□□□□ -0.28
CUX1-216ENST00000558469 ATP7BP35670 1465 aa13.33□□□□□ -0.28
CUX1-216ENST00000558469 ATAD2Q6PL18 1390 aa13.32□□□□□ -0.28
CUX1-216ENST00000558469 TMC1Q8TDI8 760 aa13.32□□□□□ -0.28
CUX1-216ENST00000558469 PRR36Q9H6K5 1346 aa13.32□□□□□ -0.28
CUX1-216ENST00000558469 AKAP12Q02952 1782 aa13.31□□□□□ -0.28
CUX1-216ENST00000558469 MST1RQ04912 1400 aa13.3□□□□□ -0.28
CUX1-216ENST00000558469 PPIP5K1Q6PFW1 1433 aa13.3□□□□□ -0.28
CUX1-216ENST00000558469 ANKARQ7Z5J8 1434 aa13.3□□□□□ -0.28
CUX1-216ENST00000558469 CABP1Q9NZU7 370 aa13.3□□□□□ -0.28
CUX1-216ENST00000558469 CCDC61Q9Y6R9 512 aa13.3□□□□□ -0.28
CUX1-216ENST00000558469 C1orf167Q5SNV9 1468 aa13.29□□□□□ -0.28
CUX1-216ENST00000558469 CERKQ8TCT0 537 aa13.29□□□□□ -0.28
CUX1-216ENST00000558469 SLC12A5Q9H2X9 1139 aa13.29□□□□□ -0.28
CUX1-216ENST00000558469 IQSEC2Q5JU85 1478 aa13.29□□□□□ -0.28
CUX1-216ENST00000558469 KIF1AQ12756 1690 aa13.28□□□□□ -0.28
CUX1-216ENST00000558469 DDX10Q13206 875 aaKnown RBP13.28□□□□□ -0.28
CUX1-216ENST00000558469 ESCO1Q5FWF5 840 aa13.28□□□□□ -0.28
CUX1-216ENST00000558469 PMFBP1Q8TBY8 1022 aa13.28□□□□□ -0.28
CUX1-216ENST00000558469 SLAIN2Q9P270 581 aa13.28□□□□□ -0.28
CUX1-216ENST00000558469 NINLQ9Y2I6 1382 aa13.28□□□□□ -0.28
CUX1-216ENST00000558469 ORAI2Q96SN7 254 aa13.27□□□□□ -0.29
CUX1-216ENST00000558469 PLEKHG3A1L390 1219 aa13.26□□□□□ -0.29
CUX1-216ENST00000558469 MON2Q7Z3U7 1717 aa13.26□□□□□ -0.29
CUX1-216ENST00000558469 PHF8Q9UPP1 1060 aa13.26□□□□□ -0.29
CUX1-216ENST00000558469 ROBO1Q9Y6N7 1651 aa13.25□□□□□ -0.29
CUX1-216ENST00000558469 CD163L1Q9NR16 1453 aa13.25□□□□□ -0.29
CUX1-216ENST00000558469 ACEP12821 1306 aa13.25□□□□□ -0.29
CUX1-216ENST00000558469 NGDNQ8NEJ9 315 aaKnown RBP13.25□□□□□ -0.29
CUX1-216ENST00000558469 PANK3Q9H999 370 aa13.25□□□□□ -0.29
CUX1-216ENST00000558469 TERF2IPQ9NYB0 399 aa13.25□□□□□ -0.29
CUX1-216ENST00000558469 TOM1O60784 492 aa13.24□□□□□ -0.29
CUX1-216ENST00000558469 HDGFL2Q7Z4V5 671 aaPredicted RBP13.24□□□□□ -0.29
CUX1-216ENST00000558469 A0A1W2PP64 1363 aa13.23□□□□□ -0.29
CUX1-216ENST00000558469 ANKRD36BQ8N2N9 1353 aa13.23□□□□□ -0.29
CUX1-216ENST00000558469 UBAP1LF5GYI3 381 aa13.23□□□□□ -0.29
CUX1-216ENST00000558469 CPSF1Q10570 1443 aaKnown RBP13.22□□□□□ -0.29
CUX1-216ENST00000558469 POLR3AO14802 1390 aaPredicted RBP13.22□□□□□ -0.29
CUX1-216ENST00000558469 KTN1Q86UP2 1357 aaKnown RBP13.22□□□□□ -0.29
CUX1-216ENST00000558469 BRINP3Q76B58 766 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms