RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 POLR3AO14802 1390 aaPredicted RBP16.72■□□□□ 0.27
LDLR-207ENST00000558013 CD109Q6YHK3 1445 aa16.71■□□□□ 0.27
LDLR-207ENST00000558013 IFT172Q9UG01 1749 aa16.71■□□□□ 0.27
LDLR-207ENST00000558013 ADGRB3O60242 1522 aa16.7■□□□□ 0.26
LDLR-207ENST00000558013 SLC24A1O60721 1099 aa16.7■□□□□ 0.26
LDLR-207ENST00000558013 RLBP1P12271 317 aa16.7■□□□□ 0.26
LDLR-207ENST00000558013 CLUAP1Q96AJ1 413 aa16.7■□□□□ 0.26
LDLR-207ENST00000558013 SBNO2Q9Y2G9 1366 aa16.7■□□□□ 0.26
LDLR-207ENST00000558013 FRMPD1Q5SYB0 1578 aa16.69■□□□□ 0.26
LDLR-207ENST00000558013 RUNDC1Q96C34 613 aa16.69■□□□□ 0.26
LDLR-207ENST00000558013 ADGRB1O14514 1584 aa16.68■□□□□ 0.26
LDLR-207ENST00000558013 NEURL4Q96JN8 1562 aa16.68■□□□□ 0.26
LDLR-207ENST00000558013 SEC24BO95487 1268 aa16.68■□□□□ 0.26
LDLR-207ENST00000558013 RARSP54136 660 aaKnown RBP16.68■□□□□ 0.26
LDLR-207ENST00000558013 POGZQ7Z3K3 1410 aa16.67■□□□□ 0.26
LDLR-207ENST00000558013 U2AF1L5P0DN76 240 aaPredicted RBP16.67■□□□□ 0.26
LDLR-207ENST00000558013 U2AF1Q01081 240 aaKnown RBP eCLIP16.67■□□□□ 0.26
LDLR-207ENST00000558013 IDI1Q13907 227 aa16.67■□□□□ 0.26
LDLR-207ENST00000558013 LMTK2Q8IWU2 1503 aa16.66■□□□□ 0.26
LDLR-207ENST00000558013 CGNL1Q0VF96 1302 aa16.66■□□□□ 0.26
LDLR-207ENST00000558013 DDRGK1Q96HY6 314 aa16.65■□□□□ 0.26
LDLR-207ENST00000558013 GGNBP2Q9H3C7 697 aa16.65■□□□□ 0.26
LDLR-207ENST00000558013 PCDHB15Q9Y5E8 787 aa16.65■□□□□ 0.26
LDLR-207ENST00000558013 PDE3AQ14432 1141 aa16.65■□□□□ 0.26
LDLR-207ENST00000558013 QRICH2Q9H0J4 1663 aa16.64■□□□□ 0.25
LDLR-207ENST00000558013 MYO3AQ8NEV4 1616 aa16.64■□□□□ 0.25
LDLR-207ENST00000558013 SHPRHQ149N8 1683 aa16.64■□□□□ 0.25
LDLR-207ENST00000558013 TSR2Q969E8 191 aaKnown RBP16.64■□□□□ 0.25
LDLR-207ENST00000558013 PHF23Q9BUL5 403 aaPredicted RBP16.63■□□□□ 0.25
LDLR-207ENST00000558013 PPLO60437 1756 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 EVC2Q86UK5 1308 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 SRPK2P78362 688 aaKnown RBP16.62■□□□□ 0.25
LDLR-207ENST00000558013 DAXXQ9UER7 740 aaPredicted RBP16.62■□□□□ 0.25
LDLR-207ENST00000558013 SETBP1Q9Y6X0 1596 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 NFKBIBQ15653 356 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 OSCARQ8IYS5 282 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 ABCC3O15438 1527 aa16.62■□□□□ 0.25
LDLR-207ENST00000558013 U2SURPO15042 1029 aaKnown RBP16.61■□□□□ 0.25
LDLR-207ENST00000558013 VGFO15240 615 aaPredicted RBP16.61■□□□□ 0.25
LDLR-207ENST00000558013 PPM1GO15355 546 aaPredicted RBP16.61■□□□□ 0.25
LDLR-207ENST00000558013 MINK1Q8N4C8 1332 aaPredicted RBP16.61■□□□□ 0.25
LDLR-207ENST00000558013 MLH3Q9UHC1 1453 aa16.61■□□□□ 0.25
LDLR-207ENST00000558013 FBLN1P23142 703 aa16.61■□□□□ 0.25
LDLR-207ENST00000558013 SIGLEC1Q9BZZ2 1709 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 TULP4Q9NRJ4 1543 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 CFAP53Q96M91 514 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 USP19O94966 1318 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 NGEFQ8N5V2 710 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 RPGRIP1LQ68CZ1 1315 aa16.6■□□□□ 0.25
LDLR-207ENST00000558013 IQSEC2Q5JU85 1478 aa16.59■□□□□ 0.25
LDLR-207ENST00000558013 FBXO31Q5XUX0 539 aaPredicted RBP16.59■□□□□ 0.25
LDLR-207ENST00000558013 IL27Q8NEV9 243 aa16.59■□□□□ 0.25
LDLR-207ENST00000558013 A0A1W2PP64 1363 aa16.58■□□□□ 0.24
LDLR-207ENST00000558013 GLI2P10070 1586 aa16.58■□□□□ 0.24
LDLR-207ENST00000558013 WDR63Q8IWG1 891 aa16.58■□□□□ 0.24
LDLR-207ENST00000558013 ZC3H13Q5T200 1668 aaKnown RBP16.58■□□□□ 0.24
LDLR-207ENST00000558013 ANKRD36BQ8N2N9 1353 aa16.57■□□□□ 0.24
LDLR-207ENST00000558013 PRAM1Q96QH2 718 aa16.57■□□□□ 0.24
LDLR-207ENST00000558013 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
LDLR-207ENST00000558013 HECW2Q9P2P5 1572 aa16.57■□□□□ 0.24
LDLR-207ENST00000558013 YEATS2Q9ULM3 1422 aa16.56■□□□□ 0.24
LDLR-207ENST00000558013 FRAT2O75474 233 aaPredicted RBP16.55■□□□□ 0.24
LDLR-207ENST00000558013 FYB1O15117 783 aa16.54■□□□□ 0.24
LDLR-207ENST00000558013 EXOSC9Q06265 439 aaKnown RBP16.54■□□□□ 0.24
LDLR-207ENST00000558013 RTN4Q9NQC3 1192 aaKnown RBP16.54■□□□□ 0.24
LDLR-207ENST00000558013 PDZRN3Q9UPQ7 1066 aa16.54■□□□□ 0.24
LDLR-207ENST00000558013 NEXMIFQ5QGS0 1516 aa16.54■□□□□ 0.24
LDLR-207ENST00000558013 TRIM35Q9UPQ4 493 aa16.53■□□□□ 0.24
LDLR-207ENST00000558013 PLEKHF1Q96S99 279 aa16.53■□□□□ 0.24
LDLR-207ENST00000558013 POGKQ9P215 609 aa16.53■□□□□ 0.24
LDLR-207ENST00000558013 CAMSAP1Q5T5Y3 1602 aa16.53■□□□□ 0.24
LDLR-207ENST00000558013 CCDC27Q2M243 656 aa16.52■□□□□ 0.24
LDLR-207ENST00000558013 MYH16Q9H6N6 1097 aa16.52■□□□□ 0.24
LDLR-207ENST00000558013 TMPOP42166 694 aaKnown RBP16.52■□□□□ 0.23
LDLR-207ENST00000558013 ARHGEF28Q8N1W1 1705 aaKnown RBP16.51■□□□□ 0.23
LDLR-207ENST00000558013 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
LDLR-207ENST00000558013 SMC4Q9NTJ3 1288 aa16.5■□□□□ 0.23
LDLR-207ENST00000558013 CABP1Q9NZU7 370 aa16.5■□□□□ 0.23
LDLR-207ENST00000558013 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.5■□□□□ 0.23
LDLR-207ENST00000558013 FTSJ3Q8IY81 847 aaKnown RBP16.5■□□□□ 0.23
LDLR-207ENST00000558013 MAPK8IP3Q9UPT6 1336 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 MVPQ14764 893 aaKnown RBP16.49■□□□□ 0.23
LDLR-207ENST00000558013 SLKQ9H2G2 1235 aaPredicted RBP16.49■□□□□ 0.23
LDLR-207ENST00000558013 ABCC11Q96J66 1382 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 NINLQ9Y2I6 1382 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 TRIM27P14373 513 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 WAPLQ7Z5K2 1190 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 PMFBP1Q8TBY8 1022 aa16.49■□□□□ 0.23
LDLR-207ENST00000558013 DZIP1LQ8IYY4 767 aaKnown RBP16.48■□□□□ 0.23
LDLR-207ENST00000558013 RIPK4P57078 832 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 GSE1Q14687 1217 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 ZKSCAN2Q63HK3 967 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 CDK19Q9BWU1 502 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 DIP2CQ9Y2E4 1556 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 PIK3C2BO00750 1634 aa16.48■□□□□ 0.23
LDLR-207ENST00000558013 SLC52A1Q9NWF4 448 aa16.47■□□□□ 0.23
LDLR-207ENST00000558013 PUS7Q96PZ0 661 aaKnown RBP16.47■□□□□ 0.23
LDLR-207ENST00000558013 ITPRIPQ8IWB1 547 aa16.46■□□□□ 0.23
LDLR-207ENST00000558013 BRPF3Q9ULD4 1205 aa16.46■□□□□ 0.23
LDLR-207ENST00000558013 NOB1Q9ULX3 412 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms