RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 POLR3EQ9NVU0 708 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 ZNF777Q9ULD5 760 aaPredicted RBP5.63□□□□□ -1.51
TRAV28-201ENST00000557548 SLC16A10Q8TF71 515 aa5.62□□□□□ -1.51
TRAV28-201ENST00000557548 JPH4Q96JJ6 628 aa5.62□□□□□ -1.51
TRAV28-201ENST00000557548 FAM217BQ9NTX9 383 aaPredicted RBP5.62□□□□□ -1.51
TRAV28-201ENST00000557548 KIAA1468Q9P260 1216 aa5.62□□□□□ -1.51
TRAV28-201ENST00000557548 RAD21O60216 631 aa5.61□□□□□ -1.51
TRAV28-201ENST00000557548 GDF9O60383 454 aa5.61□□□□□ -1.51
TRAV28-201ENST00000557548 FAM98CQ17RN3 349 aaKnown RBP5.61□□□□□ -1.51
TRAV28-201ENST00000557548 ZNF516Q92618 1163 aa5.61□□□□□ -1.51
TRAV28-201ENST00000557548 PCDHGA10Q9Y5H3 936 aa5.61□□□□□ -1.51
TRAV28-201ENST00000557548 ZBTB7CA1YPR0 619 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 BTBD11A6QL63 1104 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 TNFRSF10AO00220 468 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 AXIN1O15169 862 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 GMPRP36959 345 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 GSK3AP49840 483 aa5.6□□□□□ -1.51
TRAV28-201ENST00000557548 METTL3Q86U44 580 aaKnown RBP5.6□□□□□ -1.51
TRAV28-201ENST00000557548 ZNF697Q5TEC3 545 aa5.59□□□□□ -1.51
TRAV28-201ENST00000557548 MYSM1Q5VVJ2 828 aa5.59□□□□□ -1.51
TRAV28-201ENST00000557548 TYW1BQ6NUM6 668 aa5.59□□□□□ -1.51
TRAV28-201ENST00000557548 PADI6Q6TGC4 694 aa5.59□□□□□ -1.51
TRAV28-201ENST00000557548 NPM2Q86SE8 214 aaKnown RBP5.59□□□□□ -1.51
TRAV28-201ENST00000557548 FNBP4Q8N3X1 1017 aaPredicted RBP5.59□□□□□ -1.51
TRAV28-201ENST00000557548 NECTIN2Q92692 538 aa5.59□□□□□ -1.51
TRAV28-201ENST00000557548 CCDC97Q96F63 343 aaPredicted RBP5.59□□□□□ -1.51
TRAV28-201ENST00000557548 SEPT9Q9UHD8 586 aaPredicted RBP5.59□□□□□ -1.51
TRAV28-201ENST00000557548 AVPP01185 164 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 OATP04181 439 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 CLK2P49760 499 aaKnown RBP5.58□□□□□ -1.52
TRAV28-201ENST00000557548 CTC1Q2NKJ3 1217 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 NKX2-3Q8TAU0 364 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 PXYLP1Q8TE99 480 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.58□□□□□ -1.52
TRAV28-201ENST00000557548 COG6Q9Y2V7 657 aa5.58□□□□□ -1.52
TRAV28-201ENST00000557548 SPDYE5A6NIY4 337 aa5.57□□□□□ -1.52
TRAV28-201ENST00000557548 GDF11O95390 407 aa5.57□□□□□ -1.52
TRAV28-201ENST00000557548 FBXW7Q969H0 707 aa5.57□□□□□ -1.52
TRAV28-201ENST00000557548 EMID1Q96A84 441 aaPredicted RBP5.57□□□□□ -1.52
TRAV28-201ENST00000557548 ADGRG1Q9Y653 693 aa5.57□□□□□ -1.52
TRAV28-201ENST00000557548 KRTAP4-8A0A0G2JLE6 195 aa5.56□□□□□ -1.52
TRAV28-201ENST00000557548 RFC5P40937 340 aa5.56□□□□□ -1.52
TRAV28-201ENST00000557548 TBC1D2Q9BYX2 928 aa5.56□□□□□ -1.52
TRAV28-201ENST00000557548 SNRKQ9NRH2 765 aa5.56□□□□□ -1.52
TRAV28-201ENST00000557548 SERPINA10Q9UK55 444 aa5.56□□□□□ -1.52
TRAV28-201ENST00000557548 IGHA1P01876 353 aa5.55□□□□□ -1.52
TRAV28-201ENST00000557548 FBXO31Q5XUX0 539 aaPredicted RBP5.55□□□□□ -1.52
TRAV28-201ENST00000557548 KRTAP9-9Q9BYP9 154 aa5.55□□□□□ -1.52
TRAV28-201ENST00000557548 KRTAP9-4Q9BYQ2 154 aa5.55□□□□□ -1.52
TRAV28-201ENST00000557548 SNRPBP14678 240 aaKnown RBP5.54□□□□□ -1.52
TRAV28-201ENST00000557548 COL9A1P20849 921 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 SMCPP49901 116 aaPredicted RBP5.54□□□□□ -1.52
TRAV28-201ENST00000557548 C6orf132Q5T0Z8 1188 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 BANK1Q8NDB2 785 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 CERKQ8TCT0 537 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 IRF7Q92985 503 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 LIMD1Q9UGP4 676 aa5.54□□□□□ -1.52
TRAV28-201ENST00000557548 ZNF330Q9Y3S2 320 aaPredicted RBP5.54□□□□□ -1.52
TRAV28-201ENST00000557548 CCDC9Q9Y3X0 531 aaKnown RBP5.54□□□□□ -1.52
TRAV28-201ENST00000557548 RASSF7Q02833 373 aa5.53□□□□□ -1.52
TRAV28-201ENST00000557548 TTC13Q8NBP0 860 aa5.53□□□□□ -1.52
TRAV28-201ENST00000557548 DIXDC1Q155Q3 683 aa5.52□□□□□ -1.53
TRAV28-201ENST00000557548 RIC3Q7Z5B4 369 aa5.52□□□□□ -1.53
TRAV28-201ENST00000557548 MTMR14Q8NCE2 650 aa5.52□□□□□ -1.53
TRAV28-201ENST00000557548 RBM46Q8TBY0 533 aaKnown RBP5.52□□□□□ -1.53
TRAV28-201ENST00000557548 TRAIPQ9BWF2 469 aa5.52□□□□□ -1.53
TRAV28-201ENST00000557548 SENP2Q9HC62 589 aa5.52□□□□□ -1.53
TRAV28-201ENST00000557548 RBM27Q9P2N5 1060 aaKnown RBP5.52□□□□□ -1.53
TRAV28-201ENST00000557548 RNF223E7ERA6 249 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 TMEM259Q4ZIN3 620 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 PPP2R2DQ66LE6 453 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 RETREG2Q8NC44 543 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 SPIRE2Q8WWL2 714 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 TRIM47Q96LD4 638 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 GDPD2Q9HCC8 539 aa5.51□□□□□ -1.53
TRAV28-201ENST00000557548 PRSS12P56730 875 aa5.5□□□□□ -1.53
TRAV28-201ENST00000557548 CSPP1Q1MSJ5 1256 aa5.5□□□□□ -1.53
TRAV28-201ENST00000557548 AEBP1Q8IUX7 1158 aa5.5□□□□□ -1.53
TRAV28-201ENST00000557548 CDCA7LQ96GN5 454 aa5.5□□□□□ -1.53
TRAV28-201ENST00000557548 ABL2P42684 1182 aa5.49□□□□□ -1.53
TRAV28-201ENST00000557548 KRTAP4-12Q9BQ66 201 aa5.49□□□□□ -1.53
TRAV28-201ENST00000557548 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.48□□□□□ -1.53
TRAV28-201ENST00000557548 RCCD1A6NED2 376 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 SPTLC1O15269 473 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 CD46P15529 392 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 GPAT2Q6NUI2 795 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 RSBN1LQ6PCB5 846 aaPredicted RBP5.48□□□□□ -1.53
TRAV28-201ENST00000557548 LIAT1Q6ZQX7 453 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 NUTM1Q86Y26 1132 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 WWC1Q8IX03 1113 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 NPAS3Q8IXF0 933 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 NXF1Q9UBU9 619 aaKnown RBP5.48□□□□□ -1.53
TRAV28-201ENST00000557548 FAM198AQ9UFP1 575 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 TBC1D2BQ9UPU7 963 aa5.48□□□□□ -1.53
TRAV28-201ENST00000557548 MOXD2PA6NHM9 499 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 POM121CA8CG34 1229 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 RNF225M0QZC1 329 aaPredicted RBP5.47□□□□□ -1.53
TRAV28-201ENST00000557548 QPCTQ16769 361 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 TUSC1Q2TAM9 212 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 ANKLE1Q8NAG6 615 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms