RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 TRAK2O60296 914 aa10.5□□□□□ -0.73
CKS1BP1-201ENST00000555221 PPP4CP60510 307 aa10.5□□□□□ -0.73
CKS1BP1-201ENST00000555221 PROSER2Q86WR7 435 aaPredicted RBP10.5□□□□□ -0.73
CKS1BP1-201ENST00000555221 C6orf229H3BNL8 230 aa10.49□□□□□ -0.73
CKS1BP1-201ENST00000555221 MTMR14Q8NCE2 650 aa10.49□□□□□ -0.73
CKS1BP1-201ENST00000555221 HELBQ8NG08 1087 aaPredicted RBP10.49□□□□□ -0.73
CKS1BP1-201ENST00000555221 USP17L8P0C7I0 530 aa10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 Q3C1V9 767 aa10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 WNT2BQ93097 391 aa10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 TSR3Q9UJK0 312 aaKnown RBP10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 HPS5Q9UPZ3 1129 aa10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 COG6Q9Y2V7 657 aa10.48□□□□□ -0.73
CKS1BP1-201ENST00000555221 MORN1Q5T089 497 aa10.47□□□□□ -0.73
CKS1BP1-201ENST00000555221 POM121Q96HA1 1249 aa10.47□□□□□ -0.73
CKS1BP1-201ENST00000555221 WWC1Q8IX03 1113 aa10.46□□□□□ -0.73
CKS1BP1-201ENST00000555221 BCAMP50895 628 aa10.45□□□□□ -0.74
CKS1BP1-201ENST00000555221 PUS10Q3MIT2 529 aaKnown RBP10.44□□□□□ -0.74
CKS1BP1-201ENST00000555221 RETREG3Q86VR2 466 aa10.44□□□□□ -0.74
CKS1BP1-201ENST00000555221 FNBP4Q8N3X1 1017 aaPredicted RBP10.44□□□□□ -0.74
CKS1BP1-201ENST00000555221 TSC1Q92574 1164 aa10.44□□□□□ -0.74
CKS1BP1-201ENST00000555221 SLC27A5Q9Y2P5 690 aa10.44□□□□□ -0.74
CKS1BP1-201ENST00000555221 CFAP99D6REC4 459 aa10.43□□□□□ -0.74
CKS1BP1-201ENST00000555221 ARID3CA6NKF2 412 aa10.42□□□□□ -0.74
CKS1BP1-201ENST00000555221 CTDSPL2Q05D32 466 aa10.42□□□□□ -0.74
CKS1BP1-201ENST00000555221 PRR7Q8TB68 274 aa10.42□□□□□ -0.74
CKS1BP1-201ENST00000555221 APLP1P51693 650 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 HOMEZQ8IX15 550 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 KRTAP3-3Q9BYR6 98 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 KRTAP3-2Q9BYR7 98 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 GDPD2Q9HCC8 539 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 SALL2Q9Y467 1007 aaPredicted RBP10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 PCDHB3Q9Y5E6 796 aa10.41□□□□□ -0.74
CKS1BP1-201ENST00000555221 NR1I2O75469 434 aa10.4□□□□□ -0.74
CKS1BP1-201ENST00000555221 SYMPKQ92797 1274 aaKnown RBP10.4□□□□□ -0.74
CKS1BP1-201ENST00000555221 C1orf115Q9H7X2 142 aa10.4□□□□□ -0.74
CKS1BP1-201ENST00000555221 NDUFB9Q9Y6M9 179 aa10.4□□□□□ -0.74
CKS1BP1-201ENST00000555221 DESI1Q6ICB0 168 aa10.39□□□□□ -0.75
CKS1BP1-201ENST00000555221 ZNF330Q9Y3S2 320 aaPredicted RBP10.39□□□□□ -0.75
CKS1BP1-201ENST00000555221 ABL2P42684 1182 aa10.38□□□□□ -0.75
CKS1BP1-201ENST00000555221 GJD4Q96KN9 370 aaPredicted RBP10.38□□□□□ -0.75
CKS1BP1-201ENST00000555221 TBC1D2BQ9UPU7 963 aa10.38□□□□□ -0.75
CKS1BP1-201ENST00000555221 FMNL1O95466 1100 aaPredicted RBP10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 THSD4Q6ZMP0 1018 aa10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 SCUBE3Q8IX30 993 aa10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 USB1Q9BQ65 265 aaKnown RBP10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 WBP1LQ9NX94 342 aa10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 ZNF777Q9ULD5 760 aaPredicted RBP10.37□□□□□ -0.75
CKS1BP1-201ENST00000555221 BRICD5Q6PL45 260 aa10.36□□□□□ -0.75
CKS1BP1-201ENST00000555221 NYAP1Q6ZVC0 841 aa10.36□□□□□ -0.75
CKS1BP1-201ENST00000555221 LRRN4Q8WUT4 740 aa10.36□□□□□ -0.75
CKS1BP1-201ENST00000555221 BLOC1S3Q6QNY0 202 aa10.35□□□□□ -0.75
CKS1BP1-201ENST00000555221 RNF19BQ6ZMZ0 732 aa10.35□□□□□ -0.75
CKS1BP1-201ENST00000555221 ARID3AQ99856 593 aa10.35□□□□□ -0.75
CKS1BP1-201ENST00000555221 HMX1Q9NP08 348 aaPredicted RBP10.35□□□□□ -0.75
CKS1BP1-201ENST00000555221 KCTD12Q96CX2 325 aaKnown RBP10.34□□□□□ -0.75
CKS1BP1-201ENST00000555221 TRIM34Q9BYJ4 488 aa10.34□□□□□ -0.75
CKS1BP1-201ENST00000555221 THAP11Q96EK4 314 aa10.33□□□□□ -0.76
CKS1BP1-201ENST00000555221 WASHC4Q2M389 1173 aa10.32□□□□□ -0.76
CKS1BP1-201ENST00000555221 LYPD8Q6UX82 237 aa10.32□□□□□ -0.76
CKS1BP1-201ENST00000555221 CCDC82Q8N4S0 544 aa10.32□□□□□ -0.76
CKS1BP1-201ENST00000555221 PNMA1Q8ND90 353 aa10.32□□□□□ -0.76
CKS1BP1-201ENST00000555221 CCDC97Q96F63 343 aaPredicted RBP10.31□□□□□ -0.76
CKS1BP1-201ENST00000555221 SERPINA10Q9UK55 444 aa10.31□□□□□ -0.76
CKS1BP1-201ENST00000555221 PER1O15534 1290 aaPredicted RBP10.3□□□□□ -0.76
CKS1BP1-201ENST00000555221 PLSCR2Q9NRY7 297 aa10.3□□□□□ -0.76
CKS1BP1-201ENST00000555221 JUNDP17535 347 aa10.29□□□□□ -0.76
CKS1BP1-201ENST00000555221 MSS51Q4VC12 460 aa10.29□□□□□ -0.76
CKS1BP1-201ENST00000555221 CDAN1Q8IWY9 1227 aa10.29□□□□□ -0.76
CKS1BP1-201ENST00000555221 COPS2P61201 443 aa10.28□□□□□ -0.76
CKS1BP1-201ENST00000555221 IRF5Q13568 498 aa10.28□□□□□ -0.76
CKS1BP1-201ENST00000555221 NR6A1Q15406 480 aa10.28□□□□□ -0.76
CKS1BP1-201ENST00000555221 POTEGQ6S5H5 508 aa10.28□□□□□ -0.76
CKS1BP1-201ENST00000555221 PTPRNQ16849 979 aa10.27□□□□□ -0.77
CKS1BP1-201ENST00000555221 EPS8L1Q8TE68 723 aa10.27□□□□□ -0.77
CKS1BP1-201ENST00000555221 SPSB2Q99619 263 aa10.27□□□□□ -0.77
CKS1BP1-201ENST00000555221 GPR37L1O60883 481 aa10.26□□□□□ -0.77
CKS1BP1-201ENST00000555221 POTEMA6NI47 508 aa10.25□□□□□ -0.77
CKS1BP1-201ENST00000555221 CALR3Q96L12 384 aaKnown RBP10.25□□□□□ -0.77
CKS1BP1-201ENST00000555221 POM121CA8CG34 1229 aa10.24□□□□□ -0.77
CKS1BP1-201ENST00000555221 ZPR1O75312 459 aa10.23□□□□□ -0.77
CKS1BP1-201ENST00000555221 DXOO77932 396 aaKnown RBP10.23□□□□□ -0.77
CKS1BP1-201ENST00000555221 PTPN5P54829 565 aa10.23□□□□□ -0.77
CKS1BP1-201ENST00000555221 GLMNQ92990 594 aa10.23□□□□□ -0.77
CKS1BP1-201ENST00000555221 ADH1BP00325 375 aa10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 F12P00748 615 aaPredicted RBP10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 MMP16P51512 607 aa10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 FAM160A2Q8N612 972 aaPredicted RBP10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 MTRQ99707 1265 aa10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 IL21Q9HBE4 155 aa10.22□□□□□ -0.77
CKS1BP1-201ENST00000555221 CCNYL3P0C7X3 344 aa10.21□□□□□ -0.77
CKS1BP1-201ENST00000555221 SOX11P35716 441 aa10.21□□□□□ -0.77
CKS1BP1-201ENST00000555221 VAC14Q08AM6 782 aa10.21□□□□□ -0.77
CKS1BP1-201ENST00000555221 FKBPLQ9UIM3 349 aa10.21□□□□□ -0.77
CKS1BP1-201ENST00000555221 ZC3H4Q9UPT8 1303 aaKnown RBP10.21□□□□□ -0.78
CKS1BP1-201ENST00000555221 CTHP32929 405 aa10.2□□□□□ -0.78
CKS1BP1-201ENST00000555221 MYT1LQ9UL68 1186 aa10.2□□□□□ -0.78
CKS1BP1-201ENST00000555221 HDGFL1Q5TGJ6 251 aa10.19□□□□□ -0.78
CKS1BP1-201ENST00000555221 ARMC2Q8NEN0 867 aa10.19□□□□□ -0.78
CKS1BP1-201ENST00000555221 NUDT12Q9BQG2 462 aa10.19□□□□□ -0.78
CKS1BP1-201ENST00000555221 EVA1BQ9NVM1 165 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms