RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CARD11Q9BXL7 1154 aa15.45■□□□□ 0.06
SHMT2-218ENST00000555213 C19orf44Q9H6X5 657 aa15.45■□□□□ 0.06
SHMT2-218ENST00000555213 XIRP1Q702N8 1843 aaKnown RBP15.45■□□□□ 0.06
SHMT2-218ENST00000555213 ARHGEF28Q8N1W1 1705 aaKnown RBP15.44■□□□□ 0.06
SHMT2-218ENST00000555213 TOM1O60784 492 aa15.44■□□□□ 0.06
SHMT2-218ENST00000555213 ATF3P18847 181 aa15.44■□□□□ 0.06
SHMT2-218ENST00000555213 NALCNQ8IZF0 1738 aa15.43■□□□□ 0.06
SHMT2-218ENST00000555213 UBAP1LF5GYI3 381 aa15.43■□□□□ 0.06
SHMT2-218ENST00000555213 WAPLQ7Z5K2 1190 aa15.43■□□□□ 0.06
SHMT2-218ENST00000555213 CADPS2Q86UW7 1296 aa15.43■□□□□ 0.06
SHMT2-218ENST00000555213 PLEKHH1Q9ULM0 1364 aa15.43■□□□□ 0.06
SHMT2-218ENST00000555213 CDC42BPGQ6DT37 1551 aa15.42■□□□□ 0.06
SHMT2-218ENST00000555213 SAFB2Q14151 953 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHMT2-218ENST00000555213 CENPJQ9HC77 1338 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-218ENST00000555213 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-218ENST00000555213 ADGRB2O60241 1585 aa15.39■□□□□ 0.05
SHMT2-218ENST00000555213 SCAF1Q9H7N4 1312 aaKnown RBP15.39■□□□□ 0.05
SHMT2-218ENST00000555213 ZNF316A6NFI3 1004 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-218ENST00000555213 MINK1Q8N4C8 1332 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-218ENST00000555213 USP47Q96K76 1375 aa15.36■□□□□ 0.05
SHMT2-218ENST00000555213 QRICH2Q9H0J4 1663 aa15.36■□□□□ 0.05
SHMT2-218ENST00000555213 MST1RQ04912 1400 aa15.35■□□□□ 0.05
SHMT2-218ENST00000555213 PIP4K2BP78356 416 aa15.35■□□□□ 0.05
SHMT2-218ENST00000555213 SLAIN2Q9P270 581 aa15.35■□□□□ 0.05
SHMT2-218ENST00000555213 HIRIP3Q9BW71 556 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-218ENST00000555213 SBNO2Q9Y2G9 1366 aa15.33■□□□□ 0.04
SHMT2-218ENST00000555213 ANKARQ7Z5J8 1434 aa15.33■□□□□ 0.04
SHMT2-218ENST00000555213 FMN2Q9NZ56 1722 aa15.32■□□□□ 0.04
SHMT2-218ENST00000555213 SLC24A1O60721 1099 aa15.32■□□□□ 0.04
SHMT2-218ENST00000555213 C1orf167Q5SNV9 1468 aa15.32■□□□□ 0.04
SHMT2-218ENST00000555213 TULP4Q9NRJ4 1543 aa15.32■□□□□ 0.04
SHMT2-218ENST00000555213 WASLO00401 505 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-218ENST00000555213 EVC2Q86UK5 1308 aa15.31■□□□□ 0.04
SHMT2-218ENST00000555213 ROBO1Q9Y6N7 1651 aa15.3■□□□□ 0.04
SHMT2-218ENST00000555213 SRPK2P78362 688 aaKnown RBP15.29■□□□□ 0.04
SHMT2-218ENST00000555213 MED1Q15648 1581 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-218ENST00000555213 ST20-MTHFSA0A0A6YYL1 179 aa15.28■□□□□ 0.04
SHMT2-218ENST00000555213 NUTM2FA1L443 756 aa15.28■□□□□ 0.04
SHMT2-218ENST00000555213 EIF4G2P78344 907 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHMT2-218ENST00000555213 ESCO1Q5FWF5 840 aa15.27■□□□□ 0.04
SHMT2-218ENST00000555213 BRINP3Q76B58 766 aa15.27■□□□□ 0.04
SHMT2-218ENST00000555213 CDK19Q9BWU1 502 aa15.27■□□□□ 0.04
SHMT2-218ENST00000555213 KIF1AQ12756 1690 aa15.26■□□□□ 0.03
SHMT2-218ENST00000555213 ATP7BP35670 1465 aa15.26■□□□□ 0.03
SHMT2-218ENST00000555213 ITSN1Q15811 1721 aa15.25■□□□□ 0.03
SHMT2-218ENST00000555213 ATAD2Q6PL18 1390 aa15.24■□□□□ 0.03
SHMT2-218ENST00000555213 HSPA5P11021 654 aaKnown RBP15.24■□□□□ 0.03
SHMT2-218ENST00000555213 TMF1P82094 1093 aa15.24■□□□□ 0.03
SHMT2-218ENST00000555213 AHDC1Q5TGY3 1603 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-218ENST00000555213 USP32Q8NFA0 1604 aa15.24■□□□□ 0.03
SHMT2-218ENST00000555213 NPHP3Q7Z494 1330 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 CDCA8Q53HL2 280 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 NUDT16Q96DE0 195 aaKnown RBP15.23■□□□□ 0.03
SHMT2-218ENST00000555213 TESK2Q96S53 571 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 ORAI2Q96SN7 254 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 CABP2Q9NPB3 220 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 PHF8Q9UPP1 1060 aa15.23■□□□□ 0.03
SHMT2-218ENST00000555213 PRR36Q9H6K5 1346 aa15.22■□□□□ 0.03
SHMT2-218ENST00000555213 CCDC61Q9Y6R9 512 aa15.22■□□□□ 0.03
SHMT2-218ENST00000555213 TOPAZ1Q8N9V7 1692 aa15.22■□□□□ 0.03
SHMT2-218ENST00000555213 NHSL1Q5SYE7 1610 aa15.21■□□□□ 0.02
SHMT2-218ENST00000555213 PHLPP1O60346 1717 aa15.2■□□□□ 0.02
SHMT2-218ENST00000555213 PPIP5K1Q6PFW1 1433 aa15.2■□□□□ 0.02
SHMT2-218ENST00000555213 HSPA1LP34931 641 aa15.2■□□□□ 0.02
SHMT2-218ENST00000555213 PUS7Q96PZ0 661 aaKnown RBP15.2■□□□□ 0.02
SHMT2-218ENST00000555213 C11orf95C9JLR9 678 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-218ENST00000555213 NGDNQ8NEJ9 315 aaKnown RBP15.19■□□□□ 0.02
SHMT2-218ENST00000555213 NINLQ9Y2I6 1382 aa15.19■□□□□ 0.02
SHMT2-218ENST00000555213 FOXO3O43524 673 aa15.18■□□□□ 0.02
SHMT2-218ENST00000555213 RGPD8O14715 1765 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-218ENST00000555213 PMFBP1Q8TBY8 1022 aa15.17■□□□□ 0.02
SHMT2-218ENST00000555213 COL16A1Q07092 1604 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-218ENST00000555213 PXDNQ92626 1479 aa15.16■□□□□ 0.02
SHMT2-218ENST00000555213 PLEKHG3A1L390 1219 aa15.16■□□□□ 0.02
SHMT2-218ENST00000555213 PSME1Q06323 249 aa15.16■□□□□ 0.02
SHMT2-218ENST00000555213 POLR3AO14802 1390 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-218ENST00000555213 TMC1Q8TDI8 760 aa15.15■□□□□ 0.02
SHMT2-218ENST00000555213 DDX17Q92841 729 aaKnown RBP15.15■□□□□ 0.02
SHMT2-218ENST00000555213 SOS2Q07890 1332 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-218ENST00000555213 LRRC59Q96AG4 307 aaKnown RBP15.14■□□□□ 0.01
SHMT2-218ENST00000555213 CABP1Q9NZU7 370 aa15.14■□□□□ 0.01
SHMT2-218ENST00000555213 ACEP12821 1306 aa15.14■□□□□ 0.01
SHMT2-218ENST00000555213 JCADQ9P266 1359 aa15.13■□□□□ 0.01
SHMT2-218ENST00000555213 XPCQ01831 940 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-218ENST00000555213 DIEXFQ68CQ4 756 aaKnown RBP15.13■□□□□ 0.01
SHMT2-218ENST00000555213 KRT28Q7Z3Y7 464 aa15.13■□□□□ 0.01
SHMT2-218ENST00000555213 SBNO1A3KN83 1393 aa15.12■□□□□ 0.01
SHMT2-218ENST00000555213 TNS3Q68CZ2 1445 aa15.12■□□□□ 0.01
SHMT2-218ENST00000555213 HDGFL2Q7Z4V5 671 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-218ENST00000555213 TERF2IPQ9NYB0 399 aa15.12■□□□□ 0.01
SHMT2-218ENST00000555213 BRD4O60885 1362 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-218ENST00000555213 POLR3GLQ9BT43 218 aa15.11■□□□□ 0.01
SHMT2-218ENST00000555213 WASHC2AQ641Q2 1341 aa15.11■□□□□ 0.01
SHMT2-218ENST00000555213 ARHGEF10O15013 1369 aa15.11■□□□□ 0.01
SHMT2-218ENST00000555213 USP6P35125 1406 aa15.1■□□□□ 0.01
SHMT2-218ENST00000555213 ZNF692Q9BU19 519 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-218ENST00000555213 PHF23Q9BUL5 403 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-218ENST00000555213 PAK3O75914 559 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-218ENST00000555213 SPATA31A3Q5VYP0 1347 aa15.09■□□□□ 0.01
SHMT2-218ENST00000555213 SHPRHQ149N8 1683 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms